PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025033-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 204aa    MW: 22447.1 Da    PI: 5.7001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025033-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-193987355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   y+GVr++k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa a++ a+++l+g
  NNU_025033-RA 39 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAATAYDVAALQLRG 87
                   9****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-323896IPR001471AP2/ERF domain
CDDcd000184.50E-333897No hitNo description
SMARTSM003805.8E-3938101IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-233896IPR016177DNA-binding domain
PROSITE profilePS5103224.213895IPR001471AP2/ERF domain
PfamPF008472.4E-133987IPR001471AP2/ERF domain
PRINTSPR003672.2E-133950IPR001471AP2/ERF domain
PRINTSPR003672.2E-137797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MHDSHSSLSE RLPGISKSTG ELLSWGFMEQ SVAESGGNYR GVRRRKWGKW VSEIREPGKK  60
TRIWLGSFET PEMAATAYDV AALQLRGRSA RLNFPELAGR LPRPVSSNAD DIRSAAHEAA  120
SLLKGHPTGS FEVGSSGSSS YSVPTTVGLS QSQIQAINES PLDSPKMWTE LAEALLVEPP  180
TVVYRDTEMS YWGDEMQSDF LWTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-183595263ATERF1
3gcc_A7e-183595263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245720.11e-148PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-55ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1U7ZE661e-146A0A1U7ZE66_NELNU; ethylene-responsive transcription factor ERF021
STRINGXP_010245720.11e-147(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-52ERF family protein