PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025115-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 1019aa MW: 114290 Da PI: 7.0938

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025115-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.8e-06	177	197	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C++fa+ G C++G+ C+F H NNU_025115-RA 177 RPCNDFAA-GRCRRGSHCRFLH 197 69****.*********** PP
2	zf-CCCH	19.2	2.1e-06	285	307	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +C++f+r G C +G++Ck+ H+ NNU_025115-RA 285 TNICNDFLR-GRCYRGSSCKYVHD 307 779****.***********5 PP
3	zf-CCCH	20.5	8.3e-07	352	372	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++fa+ G C+ G+ C+F+H+ NNU_025115-RA 352 PCKYFAA-GNCRNGEYCRFSHD 372 79999.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.173	173	200	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	175	199	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.0E-5	177	198	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-5	282	307	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-4	282	308	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.906	282	309	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-5	284	307	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.455	347	374	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-4	347	373	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.77E-6	350	372	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence Send to blast
MTESVRKRNS KWDLKAETDQ STEIRQDNVW SSKGGDSIID KELKPGWGST KDADNHDPKW 60 SNVEDRNSSK PKDISAWSTW EPLSGNRGSE KDDMNRLNGE DTSEIPQTMT GWGGDPTYSS 120 NMSPGLDAWR QQNRSHSPKS GRSRAHRSRS RSPPYGFKRE AEGWVDRSRR GSGVSARPCN 180 DFAAGRCRRG SHCRFLHQDK QDYEHKRHME SASLENWRGR RDGNRHSESG PVDSLESRHE 240 KEGSFRSVNT EEARDDSWDK FPHGYRSHLD GDREKHESQR NNRSTNICND FLRGRCYRGS 300 SCKYVHDGTS SDEHGGWSTK GMARERTHDR KDAYSSFDHE HRREARRNSD IPCKYFAAGN 360 CRNGEYCRFS HDGAGQCSPK GRPQEDKWSN DVDNEIKPWG GSQWSDAVAV SSDIAKSNQW 420 RAENSDEKTV IPEPMTSNRS TYDGWGHNLD NENKMWGGPK VSDKETDKGV QKSSMWNEDD 480 VARMGNPESR ATKRSTDDRW GLSLDKKSRT CAPTWNGNEA DRDVHKSPQW NENNSRIMSI 540 SESCGNRKSL DGTNAVDRER YLSQTSQSQI ANEINLPYHE QNVTQDVSLG QQQLQHVAVT 600 MQKVVSENSY IQQHPTSRGD AATALPCKDS NRVGNTVMSQ NEVIFSANIL PMVSVPGQSF 660 NQSGQSIGTQ LHSNFNMNGQ NQQILLPQPP NSHNFNLGDQ LQQEASGPPS NPHCQPPFHL 720 GESIHKQGIA DAQMSQVTSG ISLTNNVVTS EQVAQITNLS ASLAQIFGSG QQLPQIYASL 780 NPSNVPSHST GSVAPVTIFP NQHDQTNWSQ KPYDPIGDSV ESKKHDNGDR ALMFSSNPIE 840 QKNSAIGESP APLKNNTSSI TDGPNSGDTC KNGILEEILH HGSHELKQQP VADSETRETN 900 NLTVEKSKKE QENDHQEDVN ADGQADEEGK RNKEAKGMRM FKFALVEFVK EILKPTWKEG 960 QMSKEAHKTI VKKVVDKVTS TLQGAQVPQT QEKIDHYLSY SKAKLTKLVQ AYVEKYLKT

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence Send to blast

MTESVRKRNS KWDLKAETDQ STEIRQDNVW SSKGGDSIID KELKPGWGST KDADNHDPKW  60
SNVEDRNSSK PKDISAWSTW EPLSGNRGSE KDDMNRLNGE DTSEIPQTMT GWGGDPTYSS  120
NMSPGLDAWR QQNRSHSPKS GRSRAHRSRS RSPPYGFKRE AEGWVDRSRR GSGVSARPCN  180
DFAAGRCRRG SHCRFLHQDK QDYEHKRHME SASLENWRGR RDGNRHSESG PVDSLESRHE  240
KEGSFRSVNT EEARDDSWDK FPHGYRSHLD GDREKHESQR NNRSTNICND FLRGRCYRGS  300
SCKYVHDGTS SDEHGGWSTK GMARERTHDR KDAYSSFDHE HRREARRNSD IPCKYFAAGN  360
CRNGEYCRFS HDGAGQCSPK GRPQEDKWSN DVDNEIKPWG GSQWSDAVAV SSDIAKSNQW  420
RAENSDEKTV IPEPMTSNRS TYDGWGHNLD NENKMWGGPK VSDKETDKGV QKSSMWNEDD  480
VARMGNPESR ATKRSTDDRW GLSLDKKSRT CAPTWNGNEA DRDVHKSPQW NENNSRIMSI  540
SESCGNRKSL DGTNAVDRER YLSQTSQSQI ANEINLPYHE QNVTQDVSLG QQQLQHVAVT  600
MQKVVSENSY IQQHPTSRGD AATALPCKDS NRVGNTVMSQ NEVIFSANIL PMVSVPGQSF  660
NQSGQSIGTQ LHSNFNMNGQ NQQILLPQPP NSHNFNLGDQ LQQEASGPPS NPHCQPPFHL  720
GESIHKQGIA DAQMSQVTSG ISLTNNVVTS EQVAQITNLS ASLAQIFGSG QQLPQIYASL  780
NPSNVPSHST GSVAPVTIFP NQHDQTNWSQ KPYDPIGDSV ESKKHDNGDR ALMFSSNPIE  840
QKNSAIGESP APLKNNTSSI TDGPNSGDTC KNGILEEILH HGSHELKQQP VADSETRETN  900
NLTVEKSKKE QENDHQEDVN ADGQADEEGK RNKEAKGMRM FKFALVEFVK EILKPTWKEG  960
QMSKEAHKTI VKKVVDKVTS TLQGAQVPQT QEKIDHYLSY SKAKLTKLVQ AYVEKYLKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245822.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 55
TrEMBL	A0A1U7Z1B2	0.0	A0A1U7Z1B2_NELNU; zinc finger CCCH domain-containing protein 55
STRING	XP_010245822.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-15	C3H family protein