PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025143-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 310aa    MW: 35040.5 Da    PI: 10.4358
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025143-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82.1e-18311071799
                    E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +p +f++++  +++++    ++++++g+ W v++  +k  +r++++kGW++Fvk ++L +gD +vF+++g+s+f   vk++++
  NNU_025143-RA  31 QIPPPFIKHFnRSVPRR---SIIRSPTGKCWPVTV--KKIEKRFYFQKGWQSFVKHHDLVVGDLLVFSYHGNSKF--SVKIYDR 107
                    59*****7776666555...5789***********..**********************************9999..9999987 PP
2B352.77.6e-171882721399
                    TT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  13 sgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    +  +++p   a+++   +    + k++ l d++gr W vk+++r+  gr+vl++GW eF kan+L egD + F++ +  + + +v +fr+
  NNU_025143-RA 188 RYYMTIPSAVARQFclaS----KVKMVLLWDPQGRPWPVKVCFRRD-GRVVLSDGWGEFSKANRLLEGDACSFEFCHGIGNSICVNIFRA 272
                    556899999999996422....34589999***********87776.689************************9988777789999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.4E-914108IPR003340B3 DNA binding domain
PROSITE profilePS5086314.11315108IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-2131114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-2031110IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-1632107IPR003340B3 DNA binding domain
CDDcd100171.00E-1632106No hitNo description
Gene3DG3DSA:2.40.330.102.0E-18171272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-19172271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.437176273IPR003340B3 DNA binding domain
SMARTSM010196.3E-9179273IPR003340B3 DNA binding domain
CDDcd100173.79E-17186271No hitNo description
PfamPF023621.6E-14189272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MLRLSLIGHS KSPFRVQMIE DEEEDEEEAE QIPPPFIKHF NRSVPRRSII RSPTGKCWPV  60
TVKKIEKRFY FQKGWQSFVK HHDLVVGDLL VFSYHGNSKF SVKIYDRSAC EKQMPLPPVA  120
QIQSTSVSHP TNGKQGKMMP KVTKETGGCV KPNRKPIIKN GRNGGFEAAC SYKTEFPYFI  180
GVWRNSRRYY MTIPSAVARQ FCLASKVKMV LLWDPQGRPW PVKVCFRRDG RVVLSDGWGE  240
FSKANRLLEG DACSFEFCHG IGNSICVNIF RAMGSTKRQA SNNKTGTVVP VSSATSQKGS  300
VIAVSKSLQW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245897.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A1U7Z5190.0A0A1U7Z519_NELNU; putative B3 domain-containing protein Os03g0621600 isoform X1
STRINGXP_010245897.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-14B3 family protein