PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025198-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 257aa    MW: 28385.2 Da    PI: 9.3285
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025198-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.2e-10120827
                   GGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                   ++++tGtCk+G++CkF+H++
  NNU_025198-RA  1 YYLKTGTCKFGATCKFHHPK 20
                   8*****************96 PP
2zf-CCCH37.53.9e-124266327
                   S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                   +++C +++rtG+Ck+G++CkF+H++
  NNU_025198-RA 42 ERECAYYLRTGQCKFGNTCKFHHPQ 66
                   799********************97 PP
3zf-CCCH39.49.7e-13204229227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+f+++tG Ck+G+ C+F+H++
  NNU_025198-RA 204 DQPECQFYMKTGDCKFGAVCRFHHPR 229
                    689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.8E-4119IPR000571Zinc finger, CCCH-type
SMARTSM003563.9120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915121IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-8120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2813967IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-73967IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-53966IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-104266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-44565IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624202230IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5202229IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9204229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6205232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5208230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
YYLKTGTCKF GATCKFHHPK DKAGIAGRVP LNILGYPLRP NERECAYYLR TGQCKFGNTC  60
KFHHPQPSNT VVSLPGSPVY PSVHSPTTPG QQSYPGGMTN WPLSRASFIP SPRWQGLSSY  120
AQLILPQGVV SVPNWNAYTG QLGSVSSSES QQQTVVSSQF YGTSRQSDTT SVGVQGTFPS  180
YRSGSVPVGL YALQRESVFP ERPDQPECQF YMKTGDCKFG AVCRFHHPRE RLIPVPNCVL  240
SPLGLPLRPD MFYDAPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245962.21e-174PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-138ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U7YZ851e-173A0A1U7YZ85_NELNU; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGXP_010245962.11e-174(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-91zinc finger protein 1