PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025262-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 222aa MW: 25409.9 Da PI: 7.816

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025262-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.2	2.9e-32	148	206	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+ NNU_025262-RA 148 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHTHS 206 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.2E-34	133	206	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	140	206	IPR003657	WRKY domain
PROSITE profile	PS50811	28.897	143	205	IPR003657	WRKY domain
SMART	SM00774	7.5E-38	148	207	IPR003657	WRKY domain
Pfam	PF03106	3.4E-25	149	205	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDGDRGASRS CYELEAPFSS AQPVHEMGFV QFEESQGLSF LLPCQPSHHH HHHQLSLPIN 60 NSSSSNSKTT VGLSGDDVAT RPTPWNNDQV GRLEPKTTVN DENSSGIAND DNSSWWRNSS 120 SDKSKVKVRR KLREPRFCFQ TRSDVDVLDD GYKWRKYGQK VVKNSLHPRS YYRCTHNNCR 180 VKKRVERLSE DCRMVITTYE GRHTHSPCDD SNSSEHECFS SF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-25	139	205	8	74	Probable WRKY transcription factor 4
2lex_A	3e-25	139	205	8	74	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	KVRRKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246101.1	1e-166	PREDICTED: probable WRKY transcription factor 12 isoform X1
Swissprot	Q93WY4	1e-68	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A1U7Z5J7	1e-165	A0A1U7Z5J7_NELNU; probable WRKY transcription factor 12 isoform X1
STRING	XP_010246101.1	1e-166	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	3e-57	WRKY family protein

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]