PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025355-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 413aa    MW: 44762.9 Da    PI: 6.7956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025355-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20192241255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  NNU_025355-RA 192 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 241
                    7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-22192250IPR016177DNA-binding domain
SMARTSM003802.0E-36192255IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-33192250IPR001471AP2/ERF domain
PROSITE profilePS5103225.712192249IPR001471AP2/ERF domain
PfamPF008473.6E-14192241IPR001471AP2/ERF domain
PRINTSPR003671.1E-11193204IPR001471AP2/ERF domain
CDDcd000183.54E-15200251No hitNo description
PRINTSPR003671.1E-11215231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MCLLKVANPR ETEGDTNEGF SQAPALPTQQ QLVDVSAASI LSSYNRSREM SAMVSALTHV  60
VSGERSGDWI YRPNFSGFAA PTLASSGVAV TYAAASPSSS YTSSYTSSSS LSGVGQKRGR  120
EEESSSQLPE AVSRIYRGFG EFRTSLGESS SVLPVVKEEG PNIITTTTVA TSTSSATDEI  180
STYEESGERR RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAEAAAR AYDEAALRFR  240
GNRAKLNFPE NVRLRPSLCN PATTQLTISG SPNTLSTTSQ MSQPFVQSHI QQQHSSDLRD  300
YYEYSQLLQS SGRDFSRQPT SLLEQMYYSS SLAASMHCSS SSPSSSSSYS SPLTSSVSSS  360
TSSTAFPLFF GDHQMGYMMQ PENRDQRSGG DGGSGFPTPS WTDSGYYPSS SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-23191252163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246270.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1U7Z2D60.0A0A1U7Z2D6_NELNU; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGXP_010246270.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-18ethylene response factor 110