PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025363-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 510aa MW: 55893.1 Da PI: 6.5228

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025363-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ NNU_025363-RA 60 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-16	54	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.476	55	109	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.1E-17	58	107	IPR006447	Myb domain, plants
SMART	SM00717	2.5E-13	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-14	60	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-9	60	100	IPR009057	Homeodomain-like
CDD	cd00167	1.71E-10	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MTVQDNSGCS TSNTIAMARS QTCLDVGAQS LNGVQLKEIY SCGDEFPPKV RKPYTITKQR 60 ERWTEEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR ESTGSNASSV 120 KPIEIPPPRP KRKPMHPYPR KLVHSLQKGI SVPEQPERSR SPNLSTSEAN QSPKSVLSTV 180 VSDTIGSVAS NPHNDSPSPV SSAADANPGS LVLAEQENGN LPSTSSVEED SGYPSSVPVT 240 ATSSPQDQSS TKVDWGSKDN ACDKEGATSE ASMISLKLFG RTVLVTDSNR PSSSNLGSRK 300 SPPSESCKDS DKNDEKPGKT PQQNSTQINF SMEASRSAWS PWPCGAPPMF YCMPFQKEDP 360 NLVEATSSTL PWWALYGGLP YPVMPSFNLN SIQTYPDTCL EETSKKDINR EESRTGSNTS 420 STNDAGVGEK NEDVVDFQNQ EPSSEDVEKE PASVFLLKPS ETSAFSVLKP IPNKCTKGFV 480 PYKRCLTERD AQSSGIIGEE RETQRIRLCL

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MTVQDNSGCS TSNTIAMARS QTCLDVGAQS LNGVQLKEIY SCGDEFPPKV RKPYTITKQR  60
ERWTEEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR ESTGSNASSV  120
KPIEIPPPRP KRKPMHPYPR KLVHSLQKGI SVPEQPERSR SPNLSTSEAN QSPKSVLSTV  180
VSDTIGSVAS NPHNDSPSPV SSAADANPGS LVLAEQENGN LPSTSSVEED SGYPSSVPVT  240
ATSSPQDQSS TKVDWGSKDN ACDKEGATSE ASMISLKLFG RTVLVTDSNR PSSSNLGSRK  300
SPPSESCKDS DKNDEKPGKT PQQNSTQINF SMEASRSAWS PWPCGAPPMF YCMPFQKEDP  360
NLVEATSSTL PWWALYGGLP YPVMPSFNLN SIQTYPDTCL EETSKKDINR EESRTGSNTS  420
STNDAGVGEK NEDVVDFQNQ EPSSEDVEKE PASVFLLKPS ETSAFSVLKP IPNKCTKGFV  480
PYKRCLTERD AQSSGIIGEE RETQRIRLCL

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00515	DAP	Transfer from AT5G17300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ382152	1e-46	FQ382152.1 Vitis vinifera clone SS0ABG69YH11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246196.1	0.0	PREDICTED: protein REVEILLE 1
Swissprot	F4KGY6	4e-58	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A1U7Z5S8	0.0	A0A1U7Z5S8_NELNU; protein REVEILLE 1
STRING	XP_010246196.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-46	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]