PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025370-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 851aa MW: 97379.2 Da PI: 7.0894

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025370-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.7	1.1e-24	52	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYneYA++ GFs+rksk +k+ ++g + ++ f+Cs +g+ree++++ + r+r +trtgCka++ v ++++g++++t++e+eHnHe++ NNU_025370-RA 52 FYNEYARRFGFSTRKSKAHKT-KSGITRDKIFCCSAQGFREEDRRR--LNVRHRDNTRTGCKAHMLVVLQENGQYCITRFEKEHNHEIV 137 9**************9998.778899**********9988..9999********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-20	52	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-31	255	349	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.507	524	570	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0098	545	572	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 851 aa Download sequence Send to blast
MSTQDEDCIR PCNEDEDRTN AECQSVHDEK VSKIEEPKLG MLFKTLDDAY YFYNEYARRF 60 GFSTRKSKAH KTKSGITRDK IFCCSAQGFR EEDRRRLNVR HRDNTRTGCK AHMLVVLQEN 120 GQYCITRFEK EHNHEIVTPS MSHMLRSHKR MAMAQTAQAN LANKSEVASK PIMESMANQV 180 GVDDLGFPRY NYLHTKREKD MEIGGAGAIL KFFEKLQMEN SSSFHSIQLD AADRITNAFW 240 ADSRMVVDYH YFGDVVCFDT SFRINQDERP FASFVGVNHH RQIVIFGAAL LYDETIESFK 300 WVFESFLNAM GGKMPKTILT DQCEVMEKAI EHVFPKVNHR LCVWHIYQNA AKHLSHVFCV 360 SKTFEKDFSK VIYGCEEEDE FLTAWEEMLC KYDLKENTWL KGLFEVKEKW ALVYGRNHFS 420 ANMESTQRNE SMSGSLRGYL KSSSDLSFFF TNFEEAIKDR RKKELEMDFK MIQSKPHLNT 480 PVPMLQHAAE IYTPTLFREF EKEYLSSLQC LIKSKIEIEA VINYKVSMYG NHHEHVVTFS 540 SPTLVLCTCK KFEFVGLLCA HGLRVLFDNQ VMQLPSQYFL KRWSRDAKNG SAIDYHGCAI 600 KLDPNRGYTM RASELVRISR DISNRAAENE KAYLYALNGF QKIRSGVEKI IKEEVSNSAE 660 TALSNNLGDA SDVCPRHASQ LGSCHMVDNL QGEGDNEEEE NVAVASDNAT NVVKGLARKD 720 KSDKIVVGGD RTKQPFEKRK RSKNNSQPEP QIPATTTMEV QPSSQPVVEL TGVHANMAHS 780 LDLNRFASIY QQHIMNTNTP QLRMTGLLHA SIASGTVDGN SQMNQGSVMN PPQYFFGINH 840 NQDCQPTSQD R

Sequence ? help Back to Top

Protein Sequence Length: 851 aa Download sequence Send to blast

MSTQDEDCIR PCNEDEDRTN AECQSVHDEK VSKIEEPKLG MLFKTLDDAY YFYNEYARRF  60
GFSTRKSKAH KTKSGITRDK IFCCSAQGFR EEDRRRLNVR HRDNTRTGCK AHMLVVLQEN  120
GQYCITRFEK EHNHEIVTPS MSHMLRSHKR MAMAQTAQAN LANKSEVASK PIMESMANQV  180
GVDDLGFPRY NYLHTKREKD MEIGGAGAIL KFFEKLQMEN SSSFHSIQLD AADRITNAFW  240
ADSRMVVDYH YFGDVVCFDT SFRINQDERP FASFVGVNHH RQIVIFGAAL LYDETIESFK  300
WVFESFLNAM GGKMPKTILT DQCEVMEKAI EHVFPKVNHR LCVWHIYQNA AKHLSHVFCV  360
SKTFEKDFSK VIYGCEEEDE FLTAWEEMLC KYDLKENTWL KGLFEVKEKW ALVYGRNHFS  420
ANMESTQRNE SMSGSLRGYL KSSSDLSFFF TNFEEAIKDR RKKELEMDFK MIQSKPHLNT  480
PVPMLQHAAE IYTPTLFREF EKEYLSSLQC LIKSKIEIEA VINYKVSMYG NHHEHVVTFS  540
SPTLVLCTCK KFEFVGLLCA HGLRVLFDNQ VMQLPSQYFL KRWSRDAKNG SAIDYHGCAI  600
KLDPNRGYTM RASELVRISR DISNRAAENE KAYLYALNGF QKIRSGVEKI IKEEVSNSAE  660
TALSNNLGDA SDVCPRHASQ LGSCHMVDNL QGEGDNEEEE NVAVASDNAT NVVKGLARKD  720
KSDKIVVGGD RTKQPFEKRK RSKNNSQPEP QIPATTTMEV QPSSQPVVEL TGVHANMAHS  780
LDLNRFASIY QQHIMNTNTP QLRMTGLLHA SIASGTVDGN SQMNQGSVMN PPQYFFGINH  840
NQDCQPTSQD R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246204.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7ZDZ9	0.0	A0A1U7ZDZ9_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010246204.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-127	FAR1-related sequence 5