PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025384-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 99aa MW: 11543.4 Da PI: 10.7386

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025384-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll ++++++G g W++++ + g++R++k+c++rw++yl NNU_025384-RA 10 KGSWTREEDTLLRKCIEKYGEGKWHLVPXRAGLRRCRKSCRLRWLNYL 57 799********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.493	5	61	IPR017930	Myb domain
SMART	SM00717	4.1E-14	9	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-19	10	57	IPR009057	Homeodomain-like
Pfam	PF00249	4.7E-16	10	57	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.13E-21	11	80	IPR009057	Homeodomain-like
CDD	cd00167	3.39E-11	12	57	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-5	58	80	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MEGRSLGLIK GSWTREEDTL LRKCIEKYGE GKWHLVPXRA GLRRCRKSCR LRWLNYLKPD 60 IKRGKFTLDE ADLIFRLHKL LVDCPGGRPM ISRITGTVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-13	8	81	5	77	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019051922.1	5e-52	PREDICTED: transcription factor MYB114-like, partial
Swissprot	Q9FNV8	3e-35	MY114_ARATH; Transcription factor MYB114
Swissprot	Q9FNV9	4e-35	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A1U8PZG7	1e-50	A0A1U8PZG7_NELNU; transcription factor MYB114-like
STRING	VIT_14s0006g01280.t01	1e-39	(Vitis vinifera)
STRING	EOY03964	2e-39	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66380.1	1e-37	myb domain protein 114

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]