PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025395-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 503aa MW: 56419.6 Da PI: 7.6157

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025395-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.8	4.5e-28	229	287	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ k +++pr+YYrC a gCpvkk+v+r+ ed +++++tYeg+Hnh+ NNU_025395-RA 229 YDGCQWRKYGQKTAKRNPCPRAYYRCMVApGCPVKKQVQRCLEDMSILITTYEGTHNHP 287 59***********************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-30	213	289	IPR003657	WRKY domain
SuperFamily	SSF118290	8.76E-26	222	289	IPR003657	WRKY domain
PROSITE profile	PS50811	26.716	223	289	IPR003657	WRKY domain
SMART	SM00774	1.3E-33	228	288	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	230	287	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MAKEERMMQI DLSLKLGGRE RKEEEEKVQL DGQESEKQPK YEREEAREGK EEQQDESVVN 60 SLKENLTEEH SVLQIEMNRM KEENKLLRKV VEQTMKDYHD LQTKLAIIQE NETKKDPQIF 120 LSVQGGDADT IRPKQVPEIL VDKNQTLSLP SEANNYEKDG ELGLSLSVPS HLHQREKDEP 180 KEKMMTSLKP EQNKLQKIEL SGITSHPPEP STRKAKVTVR ARCQAPTIYD GCQWRKYGQK 240 TAKRNPCPRA YYRCMVAPGC PVKKQVQRCL EDMSILITTY EGTHNHPLPL GATTVASSAS 300 GAANFLLPSG TSGAAIPGGI INDARISIPY QNPHLISPLP YSSSAINNIR GSSNHSKGIV 360 LDLTNNPQEQ FPIPSSSHSQ TKLTYPWMPS NSLYNNSAGR SVNKVGEFPS HQLFSSHRGM 420 DEKQWKMEED KSLTENVSAI ASDPKFRAAV AAAITSFISK ENPNFQPKEP TLVHKDAEHG 480 GSSSNKWCFE SLPSCSKPLW HLR

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MAKEERMMQI DLSLKLGGRE RKEEEEKVQL DGQESEKQPK YEREEAREGK EEQQDESVVN  60
SLKENLTEEH SVLQIEMNRM KEENKLLRKV VEQTMKDYHD LQTKLAIIQE NETKKDPQIF  120
LSVQGGDADT IRPKQVPEIL VDKNQTLSLP SEANNYEKDG ELGLSLSVPS HLHQREKDEP  180
KEKMMTSLKP EQNKLQKIEL SGITSHPPEP STRKAKVTVR ARCQAPTIYD GCQWRKYGQK  240
TAKRNPCPRA YYRCMVAPGC PVKKQVQRCL EDMSILITTY EGTHNHPLPL GATTVASSAS  300
GAANFLLPSG TSGAAIPGGI INDARISIPY QNPHLISPLP YSSSAINNIR GSSNHSKGIV  360
LDLTNNPQEQ FPIPSSSHSQ TKLTYPWMPS NSLYNNSAGR SVNKVGEFPS HQLFSSHRGM  420
DEKQWKMEED KSLTENVSAI ASDPKFRAAV AAAITSFISK ENPNFQPKEP TLVHKDAEHG  480
GSSSNKWCFE SLPSCSKPLW HLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	215	291	1	76	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246360.1	0.0	PREDICTED: probable WRKY transcription factor 9
TrEMBL	A0A1U7ZFQ4	0.0	A0A1U7ZFQ4_NELNU; probable WRKY transcription factor 9
STRING	XP_010246360.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	6e-62	WRKY DNA-binding protein 9