PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025540-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HSF

Protein Properties

Length: 490aa MW: 54968.6 Da PI: 5.4938

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025540-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.1	3.8e-35	19	109	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+y++++d++++e++sws+++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++i NNU_025540-RA 19 FLLKTYDMVDDSSTDEIVSWSSKKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDDFAKDQKHLLKNI 105 9**************************************************************999.........*************** PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k NNU_025540-RA 106 HRRK 109 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.5E-37	15	108	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.99E-35	15	108	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-59	15	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.7E-19	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.5E-31	19	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.7E-19	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	58	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.7E-19	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MEGGQAGSGG STSGGPAPFL LKTYDMVDDS STDEIVSWSS KKNSFVVWNP PEFARLLLPT 60 YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NDDFAKDQKH LLKNIHRRKP IHSHSQPQGS 120 SGDSERAALE EEIGRLSQEK DALHNTLCTF KQQQSVTKVQ LEDLERRVHE MGQRQLRMMN 180 FLAKAVQNPT FVENLIQMVG SCMDIEAITK KRRIPIADYS HEILDDSLMD DHSSNSKSEF 240 GHIFHQDFSN KLKLELSPAV SDSNLVSQST QSSNEDGRSP QRKTSECDMR DGRIRTEVLS 300 FSPERLELSD TGTSFALKKD APMLGQVREN ESSRFHSVQH GITSTEEGDG HISCHLNLTL 360 ASSALQESGS NCSARVSQLD QDANASSALR SIVNGKETDA KVVSKDRDYS NDDVTASSQE 420 APVNSQGPAV PQGRVNDLFW EQFLTERPGS SDNEEASSCF RANSFDDQED RKPGYAKSWR 480 NRKDMEQLTL

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MEGGQAGSGG STSGGPAPFL LKTYDMVDDS STDEIVSWSS KKNSFVVWNP PEFARLLLPT  60
YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NDDFAKDQKH LLKNIHRRKP IHSHSQPQGS  120
SGDSERAALE EEIGRLSQEK DALHNTLCTF KQQQSVTKVQ LEDLERRVHE MGQRQLRMMN  180
FLAKAVQNPT FVENLIQMVG SCMDIEAITK KRRIPIADYS HEILDDSLMD DHSSNSKSEF  240
GHIFHQDFSN KLKLELSPAV SDSNLVSQST QSSNEDGRSP QRKTSECDMR DGRIRTEVLS  300
FSPERLELSD TGTSFALKKD APMLGQVREN ESSRFHSVQH GITSTEEGDG HISCHLNLTL  360
ASSALQESGS NCSARVSQLD QDANASSALR SIVNGKETDA KVVSKDRDYS NDDVTASSQE  420
APVNSQGPAV PQGRVNDLFW EQFLTERPGS SDNEEASSCF RANSFDDQED RKPGYAKSWR  480
NRKDMEQLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-22	1	108	8	129	Heat shock factor protein 1
5d5v_B	9e-22	1	108	8	129	Heat shock factor protein 1
5d5v_D	9e-22	1	108	8	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246534.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-160	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A1U7Z337	0.0	A0A1U7Z337_NELNU; heat stress transcription factor A-5
STRING	XP_010246534.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-162	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]