PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025577-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 343aa    MW: 38464.4 Da    PI: 6.3527
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025577-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23.2e-1146102155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  ++   ++k+ + g ++ +e Aa a++ a++k++g
  NNU_025577-RA  46 SIYRGVTRHRWTGRYEAHLWDkNCWSEsQKKKGRQGAYDDEEAAAHAYDSAALKYWG 102
                    57*******************88884465566666********************98 PP
2AP252.99.2e-17145196155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg+f t eeAa+a++ a+ +++g
  NNU_025577-RA 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFATQEEAAAAYDIAAIEYRG 196
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-746102IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1546112IPR016177DNA-binding domain
SMARTSM003802.4E-2147116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-1447111IPR001471AP2/ERF domain
PROSITE profilePS5103218.68947110IPR001471AP2/ERF domain
PRINTSPR003674.4E-64859IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18145206IPR016177DNA-binding domain
PfamPF008471.3E-11145196IPR001471AP2/ERF domain
CDDcd000181.93E-12145206No hitNo description
SMARTSM003801.7E-25146210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17146204IPR001471AP2/ERF domain
PROSITE profilePS5103218.347146204IPR001471AP2/ERF domain
PRINTSPR003674.4E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAKMTHQNQR NTANSNNCNG SNTIPATKLK RTRKSVPRDS PAQRSSIYRG VTRHRWTGRY  60
EAHLWDKNCW SESQKKKGRQ GAYDDEEAAA HAYDSAALKY WGQDTVLNFP LSTYQEELKE  120
MEGLSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTFATQ  180
EEAAAAYDIA AIEYRGLNAV TNFDISRYIK CLRPNPDNPD NNPNPNLDPI HELGSSFLHH  240
QDTGVGEPAV AQPRPTGSPT ASSALGLLLQ SSKLKEMLER TSTADSPSTP PESEADPPRC  300
SFPDDIQTYF DCPDSGSYAD LDDLIIFDDL DSFVPSIYEC ELD
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246586.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-116AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U7Z6S80.0A0A1U7Z6S8_NELNU; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_010246586.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-95AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]