PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025658-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 605aa MW: 64999.1 Da PI: 6.7329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025658-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	1e-08	411	458	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq NNU_025658-RA 411 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 458 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.99E-11	405	462	No hit	No description
SuperFamily	SSF47459	5.1E-17	405	476	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-17	407	475	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	407	457	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-6	411	458	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	413	463	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MEKEKLFMNS GSPPPLSYAA SSSSPPPTWH SASSGMDVQV GELNCSSEQM RNCYVNLNWE 60 NSMDQSGAFE SSLSSMVSSP VASNATIHGG PLALRELIGR LGNMGNSGDI SPQSQTLGGS 120 AVSYIGGNNS TNTSCYSTPL NSPPKLNLSM MDQQLRGNLP ILGNSMPTHP SLVPFSTDPG 180 FAERAARFSC FGNGNFRGLP CQFGFNENEF SYRPAPRLEN GKLSRVSSSQ CLKAAGSQLG 240 GQENKEAQLQ DGSETEMRSA AAASALASER KFSKLPGSST PESAEFASAR EESSASEQIP 300 GGEAGLKGSN DANTRKRKAA PRGKAKDPSS SPSGKDEKTA LEKEDQNAKK CKSSDSTGNE 360 NNESKAKAEP CGSNNTAGDA DQKQSKETPK PPEPPKDYIH VRARRGQATD SHSLAERVRR 420 EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNME 480 SLLSKDILQS RGSLPHTVYP LDSSASTFPY AQHTQQGLPL QSSISNVTET HCSVNPLDAA 540 LRQNVGMQFP PADGFGESAP RVGTFWEDDL QSVVQMGFGQ NQSQAVFHPQ SFHGSLPTAH 600 MKIEL

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MEKEKLFMNS GSPPPLSYAA SSSSPPPTWH SASSGMDVQV GELNCSSEQM RNCYVNLNWE  60
NSMDQSGAFE SSLSSMVSSP VASNATIHGG PLALRELIGR LGNMGNSGDI SPQSQTLGGS  120
AVSYIGGNNS TNTSCYSTPL NSPPKLNLSM MDQQLRGNLP ILGNSMPTHP SLVPFSTDPG  180
FAERAARFSC FGNGNFRGLP CQFGFNENEF SYRPAPRLEN GKLSRVSSSQ CLKAAGSQLG  240
GQENKEAQLQ DGSETEMRSA AAASALASER KFSKLPGSST PESAEFASAR EESSASEQIP  300
GGEAGLKGSN DANTRKRKAA PRGKAKDPSS SPSGKDEKTA LEKEDQNAKK CKSSDSTGNE  360
NNESKAKAEP CGSNNTAGDA DQKQSKETPK PPEPPKDYIH VRARRGQATD SHSLAERVRR  420
EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNME  480
SLLSKDILQS RGSLPHTVYP LDSSASTFPY AQHTQQGLPL QSSISNVTET HCSVNPLDAA  540
LRQNVGMQFP PADGFGESAP RVGTFWEDDL QSVVQMGFGQ NQSQAVFHPQ SFHGSLPTAH  600
MKIEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246667.1	0.0	PREDICTED: transcription factor bHLH78
TrEMBL	A0A1U7Z0Y7	0.0	A0A1U7Z0Y7_NELNU; transcription factor bHLH78
STRING	XP_010246667.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-70	bHLH family protein