PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025685-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 224aa    MW: 24647.8 Da    PI: 8.7793
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025685-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.6e-102470251
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51
                   r+ h+ +Er RR+ +++ f  L  llP+a   +  + + ++iL + ++YI
  NNU_025685-RA 24 RERHKLAERERRKSMRELFLSLHALLPHA---NTVRKEQSAILDEIIKYI 70
                   899**************************...99***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-111382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-72170No hitNo description
PROSITE profilePS5088811.562273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-72470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-92481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00632886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTPEWSDCGA AGSDGKPSGG VDARERHKLA ERERRKSMRE LFLSLHALLP HANTVRKEQS  60
AILDEIIKYI PLAAARLRSL QNRGDSPSSS GISKASPTVL VSDRNSTSPN STDCDIRVAP  120
ESSSSVAIRI RGDRVNVSLS DTRGNSKAFL LSAIFDELEA HQLELIRSTH CRDGNKILHH  180
SESKICDGLD RSPALLKARL QELACKLHRL RNSSSLKESF DQLD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246746.11e-161PREDICTED: uncharacterized protein LOC104589957
TrEMBLA0A1U7ZFD11e-160A0A1U7ZFD1_NELNU; uncharacterized protein LOC104589957
STRINGXP_010246746.11e-160(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41240.26e-06basic helix-loop-helix protein 100