PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025686-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 227aa MW: 25316.8 Da PI: 9.6903

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025686-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	9.9e-10	27	73	2	51
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 r+ h+ +Er RR+ +++ f L +lP+a + + + ++iL + ++YI NNU_025686-RA 27 RERHKLAERERRKSMRELFLSLHAILPHA---NTVRKEQSAILDEIINYI 73 899************************...99*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.97E-7	23	73	No hit	No description
PROSITE profile	PS50888	11.141	25	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-11	25	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-9	27	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-7	27	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MATAEWGSDW DAAAIDGNPE AGDVNARERH KLAERERRKS MRELFLSLHA ILPHANTVRK 60 EQSAILDEII NYIPIAVARL QALKKRKNSF SPSASSMTKP TVRISNRNSA SSNSTDCIIR 120 LVPEPSSSVA VRLRGDRVNV SLTDIKCDGQ TFLLSAFLDE LEAHHLEPVR STHCRDGSKI 180 LTHSESKIPD GLERSPALLK ERLQELACKL QKLRSNVSLK RSFDQIS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246747.1	1e-165	PREDICTED: uncharacterized protein LOC104589958
TrEMBL	A0A1U7ZGP5	1e-164	A0A1U7ZGP5_NELNU; uncharacterized protein LOC104589958
STRING	XP_010246747.1	1e-165	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	6e-07	bHLH family protein