PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025692-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family FAR1
Protein Properties Length: 230aa    MW: 26840.3 Da    PI: 5.2504
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025692-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.73.8e-1398163171
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                    kfY +YA+e+GF+vrks ++    +g  ++++fvCs +g+++ ++++   +r ++  tr +C+a+++vk++
  NNU_025692-RA  98 KFYYDYAREIGFKVRKSDKEIY--KGCHVSQKFVCSAQGEQSIRENR---RRAPKRLTRFNCTASFQVKLD 163
                    6***************998777..77789*************99877...999***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-998163IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEESTLGEPT DEYESYVLYF TVLGMDRGKW VRVNLNDELN TEILEGASEG SLSQSIQVNE  60
TLKAISPSFI FNFQKPLYEL TDAEIWKMQF DSVNDATKFY YDYAREIGFK VRKSDKEIYK  120
GCHVSQKFVC SAQGEQSIRE NRRRAPKRLT RFNCTASFQV KLDLMNNRQR EAEVDFQSKM  180
KKPVIGERLK LYKEQMGSVY TKASFEKFCM IADEETNFVV DSTEHINDHQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246753.11e-98PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7Z7712e-97A0A1U7Z771_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_010246753.14e-98(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-07FAR1-related sequence 5