PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025693-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family FAR1
Protein Properties Length: 209aa    MW: 23982.2 Da    PI: 9.2566
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025693-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.41.2e-1874161191
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                    kfY +YA+e+GF vrks +     +g  ++++fvCs +g+r++ k++  + r +++ tr +C+a+++vk+++ + k++vt ++ +H+H+lap
  NNU_025693-RA  74 KFYYDYAREIGFCVRKSDKCVY--KGCHVSQKFVCSAQGERRRIKEN--RIRAPKKLTRFNCNASFQVKLDRkTRKYVVTCFVRDHSHDLAP 161
                    6***************987776..77789*************99988..9********************9989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-1574161IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDQGKQVCVN LNDELNAENL RGASEGSSSQ SVQANEMVEA NDPSFKFNNQ KPLWELTDAE  60
IWKMQFDTVH HATKFYYDYA REIGFCVRKS DKCVYKGCHV SQKFVCSAQG ERRRIKENRI  120
RAPKKLTRFN CNASFQVKLD RKTRKYVVTC FVRDHSHDLA PSPSSMYLRA KSHTTFSEAM  180
VGLNALKMFL EGVDVDRGTR FQNIFGGQT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246755.11e-120PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U7Z3M21e-119A0A1U7Z3M2_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_010246755.11e-120(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-15FAR1-related sequence 5