PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025701-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 339aa    MW: 38270.7 Da    PI: 7.225
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025701-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06178197120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp Cgk+F+r  n++ H+
  NNU_025701-RA 178 FSCPVCGKTFNRYNNMQMHM 197
                    89*****************9 PP
2zf-C2H214.69.5e-05262284123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  NNU_025701-RA 262 FMCRKCGKAFAVRGDWRTHEKNC 284
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.77E-6171200No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6178197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97178205IPR007087Zinc finger, C2H2
SMARTSM003550.017178200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-6244282No hitNo description
Gene3DG3DSA:3.30.160.608.9E-6249282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549262282IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808262282IPR007087Zinc finger, C2H2
SMARTSM00355150288311IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADPYSNFFN GWFNFNPLLH HFSSSTSSSN PSHHIPYAYN YYPNNLISSS SSNNTFVHYQ  60
SPPPSPPLRE ALPLLSLSPS RHVEEEEEPS CSAMDEDKNK TKDESFSSTA DDETVTVALH  120
IGLPSPSAAD LISRVSSSTE MTDREEVTVA SGFTTTRLNK GQYWIPTPSQ ILIGPTQFSC  180
PVCGKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML RLPCYCCAPG CRNNIDHPRA  240
KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR  300
SLKDHIKAFG HGHAAYGIDC FEEEDEPASE IEQDDESSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246927.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-147ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1U7Z1K60.0A0A1U7Z1K6_NELNU; zinc finger protein WIP2-like
STRINGXP_010246927.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-137C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]