PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025747-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

M-type_MADS

Protein Properties

Length: 97aa MW: 10662.4 Da PI: 9.9979

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025747-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.8	9.2e-16	11	52	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+n+s r +tf kR+ng++K +ELS+LC++ ++ ii+s gk NNU_025747-RA 11 ISNESAR-TTFKKRKNGLMKNVSELSTLCGVSACAIIYSLYGK 52 6777655.89*****************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.376	1	52	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.6E-16	1	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.14E-16	2	70	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.06E-22	4	71	No hit	No description
Pfam	PF00319	2.8E-15	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-5	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-5	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MAGKKVKFAL ISNESARTTF KKRKNGLMKN VSELSTLCGV SACAIIYSLY GKCLDVWPSI 60 SDAQRVLARF EPGGIPLVKD IHFEGAAVAE RERESRT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246969.1	1e-66	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q7XJK5	2e-17	AGL90_ARATH; Agamous-like MADS-box protein AGL90
TrEMBL	A0A1U7Z455	3e-65	A0A1U7Z455_NELNU; agamous-like MADS-box protein AGL80
STRING	XP_010246969.1	4e-66	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	2e-20	M-type_MADS family protein

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]