PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025861-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 221aa MW: 24703.9 Da PI: 4.554

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025861-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	58.3	2.7e-18	5	68	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+ wyfFs++d + at gyWkatg d+++ls +++++ +k++L fy+g+ap+g+kt+W+mh+y++ NNU_025861-RA 5 EHVWYFFSSEDPA---------ATGIGYWKATGVDHRILS-NSHTTACKTILEFYTGQAPNGNKTNWMMHQYKI 68 5678999988775.........5889************.999**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.692	1	88	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-22	4	87	IPR003441	NAC domain
Pfam	PF02365	2.5E-9	8	68	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MLGAEHVWYF FSSEDPAATG IGYWKATGVD HRILSNSHTT ACKTILEFYT GQAPNGNKTN 60 WMMHQYKINQ KGNNNAQDST SLCRVFLNSG HNPKHEVQQS QASLNDSSGD NTYSMLSSML 120 NMEQNNYDGQ NPAIVNSSQV TGRVDENGLL AVSERHFPEH RPNNPIQEPH EIYDFSRGDF 180 LELQDLVDPE SPSSSSENSS FLTMSSDEYF DSLALLQGGW I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-16	2	86	67	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-16	2	86	67	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-16	2	86	67	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-16	2	86	67	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-16	2	86	70	166	NAC domain-containing protein 19
3swm_B	1e-16	2	86	70	166	NAC domain-containing protein 19
3swm_C	1e-16	2	86	70	166	NAC domain-containing protein 19
3swm_D	1e-16	2	86	70	166	NAC domain-containing protein 19
3swp_A	1e-16	2	86	70	166	NAC domain-containing protein 19
3swp_B	1e-16	2	86	70	166	NAC domain-containing protein 19
3swp_C	1e-16	2	86	70	166	NAC domain-containing protein 19
3swp_D	1e-16	2	86	70	166	NAC domain-containing protein 19
4dul_A	1e-16	2	86	67	163	NAC domain-containing protein 19
4dul_B	1e-16	2	86	67	163	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019052000.1	1e-163	PREDICTED: protein SOMBRERO-like isoform X1
Refseq	XP_019052001.1	1e-163	PREDICTED: protein SOMBRERO-like isoform X1
Refseq	XP_019052002.1	1e-163	PREDICTED: protein SOMBRERO-like isoform X1
Refseq	XP_019052003.1	1e-163	PREDICTED: protein SOMBRERO-like isoform X1
TrEMBL	A0A1U8PZN6	1e-162	A0A1U8PZN6_NELNU; protein SOMBRERO-like isoform X1
STRING	XP_010246998.1	1e-163	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	2e-20	NAC domain containing protein 57