PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_025883-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Nin-like

Protein Properties

Length: 149aa MW: 16996.7 Da PI: 9.9179

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025883-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.6	4.4e-27	93	142	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+d+ kyF+lpi++A+++L+v++TvLKr+CR++GI+RWPhRkiksl NNU_025883-RA 93 ARIALSDIVKYFNLPIAEASRNLKVGVTVLKRKCRELGIPRWPHRKIKSL 142 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.678	78	149	IPR003035	RWP-RK domain
Pfam	PF02042	8.0E-22	95	142	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
NSKLTSISTL ANDLQEIFQL KHQSENQEPS PFAPKKMCEE KKDNNQSTRP MFNQDLNCLP 60 LPVVSPELTE NQQLNQAVPE VLKKKRATTE DIARIALSDI VKYFNLPIAE ASRNLKVGVT 120 VLKRKCRELG IPRWPHRKIK SLDTLIHSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247096.2	1e-104	PREDICTED: LOW QUALITY PROTEIN: protein RKD5, partial
Swissprot	O81791	7e-32	RKD5_ARATH; Protein RKD5
TrEMBL	A0A1U7Z7Z9	1e-102	A0A1U7Z7Z9_NELNU; LOW QUALITY PROTEIN: protein RKD5
STRING	XP_010247096.1	1e-103	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-34	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]