PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025913-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 116aa    MW: 13045.4 Da    PI: 5.0312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025913-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000232042123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++Cg +F++++   +H r H
  NNU_025913-RA 20 FRCHKCGWPFPNHHPSAKHRRAH 42
                   89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8712042IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MDGDEVRTMT HPPEHETPVF RCHKCGWPFP NHHPSAKHRR AHKKVCGALD GYKLIEPDRD  60
EEDSGNLKRS ESFESGHKMV GTEEDEFADA ALEFTETVAS PTTKSLEVTT EPLEVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247132.11e-77PREDICTED: uncharacterized protein LOC104590253 isoform X1
RefseqXP_010247133.18e-78PREDICTED: uncharacterized protein LOC104590253 isoform X2
TrEMBLA0A1U7Z4I12e-76A0A1U7Z4I1_NELNU; uncharacterized protein LOC104590253 isoform X1
TrEMBLA0A1U7ZG972e-76A0A1U7ZG97_NELNU; uncharacterized protein LOC104590253 isoform X2
STRINGXP_010247132.14e-77(Nelumbo nucifera)