PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_026067-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 132aa    MW: 14006.8 Da    PI: 10.6206
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_026067-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-1773105133
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                    C  C t kTp+WR gp g+ktLCnaCG++y++ 
  NNU_026067-RA  73 CLDCATDKTPQWRTGPMGPKTLCNACGVRYKSG 105
                    889****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-1767118IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.6967103IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-1568130No hitNo description
Gene3DG3DSA:3.30.50.104.1E-1568110IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.39E-1072120No hitNo description
PROSITE patternPS0034407398IPR000679Zinc finger, GATA-type
PfamPF003202.0E-1573106IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSSVRSCMEV KLVTQRSRAA PGNWSSRLLV LSSTTLSSES DVATSSGKKS TKGTPKKRES  60
SDGASGNGEG RKCLDCATDK TPQWRTGPMG PKTLCNACGV RYKSGSLVPA EYRPAASPTF  120
VLTKHSNSHP SR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267189.13e-70PREDICTED: GATA transcription factor 12-like
SwissprotP697812e-38GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1U8AW426e-69A0A1U8AW42_NELNU; GATA transcription factor
STRINGXP_010267189.11e-69(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-36GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]