PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_026124-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 465aa    MW: 51419.8 Da    PI: 9.5401
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_026124-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-1366122155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  NNU_026124-RA  66 SKYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDEEEAAARAYDLAALKYWG 122
                    89*******************66667777755555********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-966122IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1466131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-1267131IPR001471AP2/ERF domain
PROSITE profilePS5103218.71667130IPR001471AP2/ERF domain
SMARTSM003802.3E-2067136IPR001471AP2/ERF domain
PRINTSPR003674.9E-56879IPR001471AP2/ERF domain
PRINTSPR003674.9E-5112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MASSSSEPGL KAEGGGGGGG ETSEAVMAND QLLLYRGLKK AKKERPCTAK ERISKMPPCA  60
AGKRSSKYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ GAYDEEEAAA RAYDLAALKY  120
WGPGTLINFP VTDYSRDLDE MQHVSREEYL ASLRRKSSGF SRGISKYRGL SRPPQSSQWE  180
SSFGRMVGPD YLNSIHYGTG EDATTESEYA GGFCIERKID LTNCIKWWGP NKIRRPESLS  240
KSLEETRHGG SEDIGNELKT LEWTIKPTEP YQLPLLGLSC EGKKHKGSPV SALSILSRSA  300
AYKSLQEKAS KRKDNNDNDE NENNINNRKM DYGKAIEKPT SGEGGSDRTA ITLGMSGLPL  360
HRNLYPLTPF LSAPILTNYN AVEPIADPIL WTSLVPILPT GISRPTEMPG KGTKGFSSLR  420
DFEQPVTTLS PPLASRRQQA PLVLFDTHVL EMSFPNSTSF SASSK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247507.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-151AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1U7Z5C80.0A0A1U7Z5C8_NELNU; AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
STRINGXP_010247507.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-141AP2 family protein