PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_026135-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 275aa MW: 29085.1 Da PI: 8.0893

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_026135-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.2e-06	40	61	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+f C+yG+ C+F H+ NNU_026135-RA 40 ECRRFNTPEGCPYGSACRFRHV 61 6******************996 PP
2	zf-CCCH	28.4	2.9e-09	166	192	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC+ f C++Gd+C+FaHg+ NNU_026135-RA 166 YKTKLCNKFNTPEGCRFGDKCHFAHGE 192 9************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8	37	62	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.76	40	63	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.3	41	60	No hit	No description
Gene3D	G3DSA:4.10.1000.10	2.1E-5	41	64	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.9	109	123	No hit	No description
Gene3D	G3DSA:4.10.1000.10	5.5E-4	110	123	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.179	113	126	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-16	164	197	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.915	165	193	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0011	165	192	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-9	166	196	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-6	166	192	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEPYPKRTRS ENGGFGLNSR GGEQKEWGYP QQGNGGGDLE CRRFNTPEGC PYGSACRFRH 60 VTADGRDVGQ QGLSSGGKPK PCMKFFRVYI SIDNTKVTHL IDIEGCLPNT SGCPFGESCH 120 FLHYVPGGLS SLGLAPVMSL SAASAAVSQR KSGGPVGDPS VTVSGYKTKL CNKFNTPEGC 180 RFGDKCHFAH GESDLRLPNN QSRGNVRRAP VEGPRGLGPS GFSNSGTDFS NLAAYGNASN 240 FNSQGYGEPN PPGVPANDGS ATYETGSIGE NVQVY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247477.1	1e-171	PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBL	A0A1U7Z2V2	1e-170	A0A1U7Z2V2_NELNU; zinc finger CCCH domain-containing protein 14-like
STRING	XP_010247477.1	1e-171	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	9e-09	C3H family protein