PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_026148-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92666.8 Da    PI: 6.4582
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_026148-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-181775357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  NNU_026148-RA 17 KYVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 75
                   6789*****************************************************97 PP
2START171.84.4e-541663732204
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l++
  NNU_026148-RA 166 IAEETLTEFLSKATGTAVDWVQMLGMKPGPDSIGIVAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDILTVIPTGngGTIELIY 260
                    6899******************************************************.8888888888*************************** PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++++a+++l++ Rdf+++Ry+  l++g++vi+++S++s +  p+    +++vRae+lpSg+li+p+++g+s +++v+h dl++++++++lr+l++s
  NNU_026148-RA 261 MQTYAPTTLASaRDFWTLRYTTGLEDGSLVICERSLTSATGGPTgppAQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHLDLDAWSVPEVLRPLYES 356
                    ****************************************99999999************************************************ PP

                    HHHHHHHHHHHHTXXXX CS
          START 188 glaegaktwvatlqrqc 204
                    + + ++k++ a+l++ +
  NNU_026148-RA 357 SKILAQKMTIAALRHIR 373
                    ************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8071276IPR001356Homeobox domain
SMARTSM003892.2E-151480IPR001356Homeobox domain
CDDcd000861.33E-161777No hitNo description
PfamPF000463.3E-161775IPR001356Homeobox domain
SuperFamilySSF466892.18E-161779IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
CDDcd146861.79E-669108No hitNo description
PROSITE profilePS5084825.069156384IPR002913START domain
CDDcd088751.02E-72160376No hitNo description
Gene3DG3DSA:3.30.530.208.5E-24164370IPR023393START-like domain
SMARTSM002348.3E-49165375IPR002913START domain
SuperFamilySSF559612.47E-38166377No hitNo description
PfamPF018528.8E-52166373IPR002913START domain
SuperFamilySSF559616.18E-5413497No hitNo description
SuperFamilySSF559616.18E-5527601No hitNo description
PfamPF086704.8E-51701845IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MALSMHKESK QQMDTSKYVR YTPEQVEALE RVYSECPKPS SMRRQQLIRE CPILANIEPK  60
QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYMRQQ  120
LQTASVATTD TSCESVVTSG QHHKQQNPTP QHPQRDVNNP AGLLAIAEET LTEFLSKATG  180
TAVDWVQMLG MKPGPDSIGI VAVSHNCSGV AARACGLVSL EPTKVAEILK DRPSWFRDCR  240
CLDILTVIPT GNGGTIELIY MQTYAPTTLA SARDFWTLRY TTGLEDGSLV ICERSLTSAT  300
GGPTGPPAQN FVRAEMLPSG YLIRPCEGGG SIIHIVDHLD LDAWSVPEVL RPLYESSKIL  360
AQKMTIAALR HIRQIAQETS GEIQYGGGRQ PAVLRTFSQR LCRGFNDAIN GFSDDGWSLM  420
GSDGVEDVTI AINSTPSKLL GCQVNSSTVF SNFGGGVLCA KASMLLQNVP PALLVRFLRE  480
HRSEWADCGV DAYSAASLKA SPCAVLGARP SGFPSSQVIL PLAHTVEHEE FLEVIRLEGH  540
GFPQEDAVIP RDMYLLQLCS GVDENAAGAC AQLVFAPIDE SFADDAPLLP SGFRVIPLDP  600
KTDGPATTRT LDLASALEVG AGGTRSDGDS SSNGYNLRSV LTIAFQFTYE NHFRDNVAAM  660
ARQYVRSVVG SVQRVAMAIA PSRLSSQLGP KSLPGSPEAL TLARWICRSY RLHTGVDLLR  720
VDSQVGDSVL KQLWHHSDAI MCCSLKTNAS PVFTFANQAG LDMLETTLVA LQDIMLDKIL  780
DEAGRKVLCA EFSKIMQQGF ACLPAGVCIS SMGRTASYDQ AVAWKVLNEE DSNHCLAFMF  840
MNWSFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247499.10.0PREDICTED: homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1U7Z8Y80.0A0A1U7Z8Y8_NELNU; homeobox-leucine zipper protein HOX32-like
STRINGXP_010247498.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]