PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_026415-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 225aa    MW: 24872.4 Da    PI: 4.1358
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_026415-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-1816601256
                   HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   ++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  NNU_026415-RA 16 VNLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 60
                   578*****************************************9 PP
2HD-ZIP_I/II121.73.6e-3916971192
    HD-ZIP_I/II 11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                   v+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l +e +++ ke+e+L++e+ 
  NNU_026415-RA 16 VNLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSEYDSIVKENENLKSEVV 97
                   789***************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-11866IPR001356Homeobox domain
SuperFamilySSF466891.37E-171173IPR009057Homeodomain-like
PROSITE profilePS5007115.8231562IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-201569IPR009057Homeodomain-like
CDDcd000866.36E-161663No hitNo description
PfamPF000463.3E-151660IPR001356Homeobox domain
PRINTSPR000313.0E-63342IPR000047Helix-turn-helix motif
PROSITE patternPS0002703760IPR017970Homeobox, conserved site
PRINTSPR000313.0E-64258IPR000047Helix-turn-helix motif
PfamPF021836.9E-1962104IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGTCYSSGTQ IPFFEVNLLE KSFEAENKLE PERKTQLAKK LGLQPRQVAV WFQNRRARWK  60
TKQLERDYDV LKSSYDSLLS EYDSIVKENE NLKSEVVSLT DKLQAKEAAE GTMMVGQKAD  120
PPLPVTADGE AVVLVTVKVE DRLSSGSGSG GSAVVDEDGL QLVDSGDSYF PADDDYRGCM  180
GPVDGMQSEE DDGSDDNQSY FSDVLAAAEQ QHHEAGEALS WWVWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15462RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247931.11e-151PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022831e-67HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1U7ZA121e-149A0A1U7ZA12_NELNU; homeobox-leucine zipper protein HAT5
STRINGXP_010247931.11e-150(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-52homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]