PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_026428-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 432aa    MW: 48015.1 Da    PI: 6.3721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_026428-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.2e-15248294455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P +      K +Ka++L +++eY+ksLq
  NNU_026428-RA 248 VHNLSERRRRDRINDKMRALQELIPYC-----NKSDKASMLDEVIEYLKSLQ 294
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-19243308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.701244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-16247298No hitNo description
PfamPF000104.6E-13248294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-19248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MLCLKTRTSE RRRNGPNGAT ERVPDNGLAE ILWQNGQVVL HSQTRKKPGL APNESRQLQK  60
SDQSTFKGCG SFGKSSNLIQ DDETASWIQF PFEDSLEKEF CSDFFCELPN SNSSDADEET  120
NQFEGDKPVK FGASEESNII IGTTAVRSEQ PAVKKSNNLN FAETPICPPR LQIPALTQKQ  180
CNFEGGGKII NFSLFSRASN ADLGSSNEPI EQKGSGNVIS EEAEFESDKA TKPAQRSGSA  240
CRSRAAEVHN LSERRRRDRI NDKMRALQEL IPYCNKSDKA SMLDEVIEYL KSLQLQLQIM  300
WMGSGMAPMM FPGIQNYISR MGMGMAPPPL PSIHSAMQLP RVPLVDQAIP SASTPNQSTM  360
CPTPLLNPIN FQNQMQNSNF PEQYAHYMSF QQMQTAQPMN MFPYGFQTVQ KNHKMAFDGC  420
PPTDSTQSGK LG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247965.11e-153PREDICTED: transcription factor PIF5-like isoform X1
RefseqXP_010247966.11e-153PREDICTED: transcription factor PIF5-like isoform X1
RefseqXP_010247967.11e-153PREDICTED: transcription factor PIF5-like isoform X1
TrEMBLA0A1U7ZJK21e-152A0A1U7ZJK2_NELNU; transcription factor PIF5-like isoform X1
STRINGXP_010247965.11e-153(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.43e-52phytochrome interacting factor 3-like 6