PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NP_001266054.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 191aa MW: 21971.6 Da PI: 4.4593

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NP_001266054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95.6	7.8e-30	9	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGf F+Ptdeelv ++L k+++ + + ++i+++++ +++Pw+L k+ ++ +e y F++ ++ +r+ ++gyWk+ g +k+++s+ NP_001266054.1 9 LPPGFYFSPTDEELVLHFLYSKASNLPYHP-NIIPHLHLSHIDPWELYGKALSSGNEHYLFTEVKE--------SRSNENGYWKEIGATKAIVSA 94 79***********************988.89**********9777778899998755........566679************ PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvf ++g++t+W+m+ey++ NP_001266054.1 95 ANNILGMKKYLVFT---LREGTQTNWIMEEYHI 124 *********8...68899*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-39	5	148	IPR003441	NAC domain
PROSITE profile	PS51005	36.737	9	148	IPR003441	NAC domain
Pfam	PF02365	5.8E-20	10	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MLGSENMKLP PGFYFSPTDE ELVLHFLYSK ASNLPYHPNI IPHLHLSHID PWELYGKALS 60 SGNEHYLFTE VKESRSNENG YWKEIGATKA IVSAANNILG MKKYLVFTLR EGTQTNWIME 120 EYHISSSTSP INLEESWSKW VLCKVYEKKM SQMSQQVCYS DEDVDSGTEV SWLDEVFMSL 180 DDDLDETSQP N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-26	6	151	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-26	6	151	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-26	6	151	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-26	6	151	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-26	6	151	17	171	NAC domain-containing protein 19
3swm_B	2e-26	6	151	17	171	NAC domain-containing protein 19
3swm_C	2e-26	6	151	17	171	NAC domain-containing protein 19
3swm_D	2e-26	6	151	17	171	NAC domain-containing protein 19
3swp_A	2e-26	6	151	17	171	NAC domain-containing protein 19
3swp_B	2e-26	6	151	17	171	NAC domain-containing protein 19
3swp_C	2e-26	6	151	17	171	NAC domain-containing protein 19
3swp_D	2e-26	6	151	17	171	NAC domain-containing protein 19
4dul_A	2e-26	6	151	14	168	NAC domain-containing protein 19
4dul_B	2e-26	6	151	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	NP_001266054.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU339184	0.0	EU339184.1 Cicer arietinum NAC transcription factor protein 2 (NAC2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001266054.1	1e-141	NAC transcription factor 25-like
Swissprot	Q8GWK6	3e-50	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	C0IN05	1e-139	C0IN05_CICAR; NAC transcription factor 25-like
STRING	XP_004503931.1	1e-140	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-52	xylem NAC domain 1

Link Out ? help Back to Top
Entrez Gene	101488537

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]