PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001266090.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 239aa    MW: 26900.1 Da    PI: 9.9928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001266090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.21.4e-48131381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+e+ ++ +++PwdLp  +    +e yfFs+++ ky++g+r+nrat+sgyWkatg dk++l+
  NP_001266090.1  13 LPPGFRFHPTDEELVVQYLKRKVFSFPLPA-SIIPELhHLSNSDPWDLPGDL---GEERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQILN 103
                     79****************************.789999799*********543...5799***********************************9 PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++ +vg+kktLvfykg+ p+g++tdW+mheyrl
  NP_001266090.1 104 SnSNVVVGMKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                     8556679**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-579157IPR003441NAC domain
PROSITE profilePS5100556.63213157IPR003441NAC domain
PfamPF023654.0E-2714138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MNLVKKKNGE VKLPPGFRFH PTDEELVVQY LKRKVFSFPL PASIIPELHH LSNSDPWDLP  60
GDLGEERYFF STKEAKYPNG NRSNRATNSG YWKATGLDKQ ILNSNSNVVV GMKKTLVFYK  120
GKPPHGSRTD WIMHEYRLTN HSSSLKQNWV VCRIFLKKRG GAKNGGGRGG ENTVTVREKP  180
SKVKNSNSNS NSKVVVFYDF LSSPILSATS GITEEHNENE NENEHEDSSS SFPSLTNNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-471016314171NO APICAL MERISTEM PROTEIN
1ut4_B3e-471016314171NO APICAL MERISTEM PROTEIN
1ut7_A3e-471016314171NO APICAL MERISTEM PROTEIN
1ut7_B3e-471016314171NO APICAL MERISTEM PROTEIN
3swm_A3e-471016317174NAC domain-containing protein 19
3swm_B3e-471016317174NAC domain-containing protein 19
3swm_C3e-471016317174NAC domain-containing protein 19
3swm_D3e-471016317174NAC domain-containing protein 19
3swp_A3e-471016317174NAC domain-containing protein 19
3swp_B3e-471016317174NAC domain-containing protein 19
3swp_C3e-471016317174NAC domain-containing protein 19
3swp_D3e-471016317174NAC domain-containing protein 19
4dul_A3e-471016314171NAC domain-containing protein 19
4dul_B3e-471016314171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001266090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3391830.0EU339183.1 Cicer arietinum NAC transcription factor protein 1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266090.11e-176NAC transcription factor
SwissprotQ9FY937e-85NAC83_ARATH; NAC domain-containing protein 83
TrEMBLC0IN041e-175C0IN04_CICAR; NAC transcription factor
STRINGXP_004491679.11e-175(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-82NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]