PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001280190.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 353aa    MW: 40407 Da    PI: 4.8572
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001280190.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-092963302155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yp+++++  LA+++gL++rq+ +WF N+R ++
  NP_001280190.1 296 KWPYPTEADKIALAESTGLDQRQINNWFINQRKRH 330
                     569*****************************885 PP
2ELK26.91.1e-09250271122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     +LK++L+r +++++g+Lk EFs
  NP_001280190.1 250 DLKDRLMRRFGSHIGTLKLEFS 271
                     69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.8E-2194138IPR005540KNOX1
PfamPF037902.6E-2195137IPR005540KNOX1
SMARTSM012561.3E-26158209IPR005541KNOX2
PfamPF037911.8E-24163208IPR005541KNOX2
PfamPF037893.5E-7250271IPR005539ELK domain
PROSITE profilePS512139.411250270IPR005539ELK domain
SMARTSM011881.2E-4250271IPR005539ELK domain
PROSITE profilePS5007112.746270333IPR001356Homeobox domain
SuperFamilySSF466891.03E-19271345IPR009057Homeodomain-like
SMARTSM003893.2E-13272337IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-27275334IPR009057Homeodomain-like
CDDcd000867.42E-12282334No hitNo description
PfamPF059203.5E-17290329IPR008422Homeobox KN domain
PROSITE patternPS000270308331IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEMYGLQST AEYGDKGFQS TAEYEDRALM TPENLILPLD YQSLLVSSGA FRGEHHHHRV  60
PMFGSDDVVL YSAMSEAASP TITPEFQREE DVFGAIKAKI ASHPTYPRLI QAYIECQKVG  120
APPEIASFLD EIRRENDFYN YKQQQQQRGS CNSNSSMSST YLGADPELDE FMETYCEMLV  180
KYKSDLSRPF DEATTFLNKI ELQLSNLCTS SAHASSIRTL SDEGGASSDE DFSGGEIEVQ  240
EAQQRGEDRD LKDRLMRRFG SHIGTLKLEF SKKKKKGKLP KEARQTLFDW WSVHYKWPYP  300
TEADKIALAE STGLDQRQIN NWFINQRKRH WRPSENMQFA VMDNIAGPFF TDD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001280190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1623350.0KJ162335.1 Prunus mume knotted1-like homeobox transcription factor (KNAT2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280190.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-139KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLX4QVR50.0X4QVR5_PRUMU; Knotted1-like homeobox transcription factor
STRINGXP_008221855.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-132KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]