PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001280191.1
Common NamePmdam6
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 26801.7 Da    PI: 5.0005
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001280191.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.14.7e-231962851
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rqvtfskRr g++KKA ELSvLC+ evav+ifs t+kl+ yss
  NP_001280191.1 19 ARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATDKLFHYSS 62
                    69****************************************96 PP
2K-box49.51.8e-17901731598
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +  ++++ kL ke+e+  r++R+++GedLe L+l eL +Leq +e sl ++ ++K+el++++i  l kk  el e+n++Lr+++
  NP_001280191.1  90 QLENENHIKLSKELEEKSRQLRQMKGEDLEGLNLDELLKLEQLVEASLGRVIETKEELIMSEIMALEKKGAELVETNNQLRHRM 173
                     555677889************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.96464IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-31463IPR002100Transcription factor, MADS-box
CDDcd002654.13E-33678No hitNo description
PRINTSPR004041.6E-21626IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-27677IPR002100Transcription factor, MADS-box
PfamPF003192.1E-211960IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-212641IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-214162IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.87989179IPR002487Transcription factor, K-box
PfamPF014861.8E-1492173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVKMMREKIK IKKIDYLPAR QVTFSKRRRG LFKKAAELSV LCESEVAVVI FSATDKLFHY  60
SSSSTENVIE RYKAHTGGVE KSDKQFLELQ LENENHIKLS KELEEKSRQL RQMKGEDLEG  120
LNLDELLKLE QLVEASLGRV IETKEELIMS EIMALEKKGA ELVETNNQLR HRMVMLSGGN  180
TGPAFVEPET LITNVGGGGG EDDMSSESAV IATSTSCNSA FSLSLEDDCS DVTLSLKLGL  240
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-17475172MEF2C
5f28_B7e-17475172MEF2C
5f28_C7e-17475172MEF2C
5f28_D7e-17475172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001280191.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4373450.0AB437345.1 Prunus mume Pmdam6 mRNA for dormancy-associated MADS-box transcription factor 6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280191.11e-175MADS-box protein AGL24-like
SwissprotQ9FUY61e-64JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLB9A1S91e-173B9A1S9_PRUMU; Dormancy-associated MADS-box transcription factor 6
STRINGXP_008219268.11e-170(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-45MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]