PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001280193.1
Common NamePmDAM1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26817.7 Da    PI: 7.4209
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001280193.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.3e-251161151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr gi+KKA ELSvLC+ evav+ifs tgkl++yss
  NP_001280193.1 11 KKIDNLPARQVTFSKRRRGIFKKAAELSVLCESEVAVVIFSATGKLFDYSS 61
                    689999*******************************************96 PP
2K-box48.15.1e-17881711497
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +  ++++ +L ke+++  r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+e ++++i  l +k  el ++nk+Lr++
  NP_001280193.1  88 LQPEYENHIRLSKELKEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDERIMSEIMALERKRAELVKANKQLRQR 171
                     45566777789999999999**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.74363IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-35362IPR002100Transcription factor, MADS-box
CDDcd002654.50E-35572No hitNo description
SuperFamilySSF554551.31E-28576IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-24525IPR002100Transcription factor, MADS-box
PfamPF003194.7E-221259IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-242540IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-244061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.75188188IPR002487Transcription factor, K-box
PfamPF014861.0E-1491172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MKMMREKIKI KKIDNLPARQ VTFSKRRRGI FKKAAELSVL CESEVAVVIF SATGKLFDYS  60
SSSMKDVIER YQVHINGGEK FNERSIELQP EYENHIRLSK ELKEKSRQLR QMKGEDLEEL  120
NFDELQKLEQ LVDASLGRVI ETKDERIMSE IMALERKRAE LVKANKQLRQ RMLFRGNIGP  180
ELMKPERLNN NFGGGGEEEG MSSESATSTT CNSAPSLSLE DDSDDVTLSL KLGLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17371169MEF2C
5f28_B2e-17371169MEF2C
5f28_C2e-17371169MEF2C
5f28_D2e-17371169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001280193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5763500.0AB576350.1 Prunus mume PmDAM1 mRNA for dormancy associated MADS-box 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280193.11e-170MADS-box protein AGL24-like
SwissprotQ9FUY62e-67JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLG1UE191e-169G1UE19_PRUMU; Dormancy associated MADS-box 1
STRINGXP_008219269.11e-167(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-57AGAMOUS-like 24
Publications ? help Back to Top
  1. Sasaki R, et al.
    Functional and expressional analyses of PmDAM genes associated with endodormancy in Japanese apricot.
    Plant Physiol., 2011. 157(1): p. 485-97
    [PMID:21795580]
  2. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]