PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001280194.1
Common NamePmDAM2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 26824.7 Da    PI: 5.3131
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001280194.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF771.4e-241962851
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss
  NP_001280194.1 19 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 62
                    69****************************************96 PP
2K-box51.44.5e-1879173798
           K-box   7 ksleeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++++++ + +lq e+++  + +++L    r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i  l +k  el e+n++Lr+++
  NP_001280194.1  79 VEKSDEPSVELQLEIENQIRLNKELAeksRQLRQMRGEDLEKLNIDELQKLEQLVDASLGRVIETKEELIMSEIMALERKGAELVEANNQLRQRM 173
                     44666667778888887777777776666999************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-31463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.296464IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-23626IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-27677IPR002100Transcription factor, MADS-box
PfamPF003191.6E-211960IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-232641IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-234162IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.01889179IPR002487Transcription factor, K-box
PfamPF014861.6E-1496173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVKTMRKKIK IKKIDYLPAR QVTFSKRRRG IFKKAEELSV LCESEVAVVI FSATGKLFDY  60
SSSSTKNVVE RYKAHTNGVE KSDEPSVELQ LEIENQIRLN KELAEKSRQL RQMRGEDLEK  120
LNIDELQKLE QLVDASLGRV IETKEELIMS EIMALERKGA ELVEANNQLR QRMVMLSRGN  180
IGPGLTEPER FINNIGDGGE EGMSSESATN ATISSCSSGL SLSLEDDCSD VTLALKLGLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A4e-16675271Myocyte-specific enhancer factor 2A
3mu6_B4e-16675271Myocyte-specific enhancer factor 2A
3mu6_C4e-16675271Myocyte-specific enhancer factor 2A
3mu6_D4e-16675271Myocyte-specific enhancer factor 2A
5f28_A9e-16675372MEF2C
5f28_B9e-16675372MEF2C
5f28_C9e-16675372MEF2C
5f28_D9e-16675372MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001280194.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5763510.0AB576351.1 Prunus mume PmDAM2 mRNA for dormancy associated MADS-box 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280194.11e-173MADS-box protein JOINTLESS-like
SwissprotQ9FVC14e-68SVP_ARATH; MADS-box protein SVP
TrEMBLG1UE201e-171G1UE20_PRUMU; Dormancy associated MADS-box 2
STRINGXP_008219270.11e-171(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.14e-60AGAMOUS-like 24
Publications ? help Back to Top
  1. Sasaki R, et al.
    Functional and expressional analyses of PmDAM genes associated with endodormancy in Japanese apricot.
    Plant Physiol., 2011. 157(1): p. 485-97
    [PMID:21795580]
  2. Ramamoorthy R,Phua EE,Lim SH,Tan HT,Kumar PP
    Identification and characterization of RcMADS1, an AGL24 ortholog from the holoparasitic plant Rafflesia cantleyi Solms-Laubach (Rafflesiaceae).
    PLoS ONE, 2013. 8(6): p. e67243
    [PMID:23840638]
  3. Jaudal M, et al.
    Overexpression of Medicago SVP genes causes floral defects and delayed flowering in Arabidopsis but only affects floral development in Medicago.
    J. Exp. Bot., 2014. 65(2): p. 429-42
    [PMID:24249713]
  4. Müller-Xing R,Clarenz O,Pokorny L,Goodrich J,Schubert D
    Polycomb-Group Proteins and FLOWERING LOCUS T Maintain Commitment to Flowering in Arabidopsis thaliana.
    Plant Cell, 2014. 26(6): p. 2457-2471
    [PMID:24920331]
  5. Hwan Lee J,Sook Chung K,Kim SK,Ahn JH
    Post-translational regulation of SHORT VEGETATIVE PHASE as a major mechanism for thermoregulation of flowering.
    Plant Signal Behav, 2014. 9(4): p. e28193
    [PMID:25764420]
  6. Chen Z, et al.
    Overexpression of AtAP1M3 regulates flowering time and floral development in Arabidopsis and effects key flowering-related genes in poplar.
    Transgenic Res., 2015. 24(4): p. 705-15
    [PMID:25820621]
  7. Wells CE,Vendramin E,Jimenez Tarodo S,Verde I,Bielenberg DG
    A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch].
    BMC Plant Biol., 2015. 15: p. 41
    [PMID:25848674]
  8. Müller-Xing R,Schubert D,Goodrich J
    Non-inductive conditions expose the cryptic bract of flower phytomeres in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(4): p. e1010868
    [PMID:25924005]
  9. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  10. Bechtold U, et al.
    Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis.
    Plant Cell, 2016. 28(2): p. 345-66
    [PMID:26842464]
  11. Fernández V,Takahashi Y,Le Gourrierec J,Coupland G
    Photoperiodic and thermosensory pathways interact through CONSTANS to promote flowering at high temperature under short days.
    Plant J., 2016. 86(5): p. 426-40
    [PMID:27117775]
  12. Wilson DC,Kempthorne CJ,Carella P,Liscombe DK,Cameron RK
    Age-Related Resistance in Arabidopsis thaliana Involves the MADS-Domain Transcription Factor SHORT VEGETATIVE PHASE and Direct Action of Salicylic Acid on Pseudomonas syringae.
    Mol. Plant Microbe Interact., 2017. 30(11): p. 919-929
    [PMID:28812948]
  13. Zou YP, et al.
    Adaptation of Arabidopsis thaliana to the Yangtze River basin.
    Genome Biol., 2017. 18(1): p. 239
    [PMID:29284515]
  14. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]