PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001280196.1
Common NamePmDAM4
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25445.4 Da    PI: 5.6194
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001280196.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.35.7e-251362251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+  s rqvtfskRr gi+KKA ELSvLC+ evav+ifs tgkl++yss
  NP_001280196.1 13 KIDYLSARQVTFSKRRRGIFKKAAELSVLCGSEVAVVIFSATGKLFDYSS 62
                    6777799*****************************************96 PP
2K-box37.78.5e-14881691394
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     + +  +++  kL  e+e+  r++R+++GedLe+L+l eL +Leq +e  l ++ ++K+el+++ i  l kk  el e+n+++
  NP_001280196.1  88 ELQLENENRIKLSTELEEKNRQLRRMKGEDLEELDLDELLKLEQLVEATLVRVMETKEELIMSDIVALDKKGTELVEANNQM 169
                     3333444455888888888899*********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-32463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.689464IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-27676IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-22626IPR002100Transcription factor, MADS-box
PfamPF003191.6E-221760IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-222641IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-224162IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.58589182IPR002487Transcription factor, K-box
PfamPF014866.1E-1190169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVKIMRKKIK IKKIDYLSAR QVTFSKRRRG IFKKAAELSV LCGSEVAVVI FSATGKLFDY  60
SSSSIKDVIE RYKARTNGVE KSDEQSLELQ LENENRIKLS TELEEKNRQL RRMKGEDLEE  120
LDLDELLKLE QLVEATLVRV METKEELIMS DIVALDKKGT ELVEANNQMV MLRDRMVMLS  180
KRSTGPALME PSDSATSTSC NSALSLSLED ECSDDAILSL KLGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16672369MEF2C
5f28_B8e-16672369MEF2C
5f28_C8e-16672369MEF2C
5f28_D8e-16672369MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001280196.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5763530.0AB576353.1 Prunus mume PmDAM4 mRNA for dormancy associated MADS-box 4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280196.11e-158MADS-box protein AGL24-like
TrEMBLG1UE221e-157G1UE22_PRUMU; Dormancy associated MADS-box 4
STRINGXP_008219272.11e-139(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.15e-38AGAMOUS-like 24
Publications ? help Back to Top
  1. Sasaki R, et al.
    Functional and expressional analyses of PmDAM genes associated with endodormancy in Japanese apricot.
    Plant Physiol., 2011. 157(1): p. 485-97
    [PMID:21795580]