PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001280197.1
Common NamePmDAM5
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26077.6 Da    PI: 4.5662
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001280197.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF725.3e-231558851
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rqvtfskRr g++KKA ELSvLC+ evav+ifs t kl++yss
  NP_001280197.1 15 ARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATSKLFDYSS 58
                    69****************************************96 PP
2K-box49.41.9e-1778168797
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     ++++e + +  ++++ kL ke+e+  +++R+++GedLe L+l eL +Leq +e sl ++ ++K+el++++i el +k  el e+n +Lr+ 
  NP_001280197.1  78 SNNQEIELQLENENHIKLSKELEKTSHQLRQMKGEDLEGLNLDELLKLEQLVEASLGRVMETKEELIKSEIMELERKGAELVEANSQLRQT 168
                     3467777888899999*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.642160IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-27159IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-21222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-25372IPR002100Transcription factor, MADS-box
CDDcd002651.28E-31468No hitNo description
PfamPF003198.0E-211556IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-212237IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-213758IPR002100Transcription factor, MADS-box
PfamPF014863.5E-1584168IPR002487Transcription factor, K-box
PROSITE profilePS5129712.38585178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMNKIKIKKI DYLPARQVTF SKRRRGLFKK AAELSVLCES EVAVVIFSAT SKLFDYSSSS  60
TKDVIERYNA DMNGVEKSNN QEIELQLENE NHIKLSKELE KTSHQLRQMK GEDLEGLNLD  120
ELLKLEQLVE ASLGRVMETK EELIKSEIME LERKGAELVE ANSQLRQTMV MLSGGNTGPA  180
LMDPERLNNN IEGGGEEEGM SAESAISTTC NSAVSLSLED DSSDEVTLSL KLGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-15468569MEF2C
5f28_B4e-15468569MEF2C
5f28_C4e-15468569MEF2C
5f28_D4e-15468569MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001280197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5763490.0AB576349.1 Prunus mume PmDAM5 mRNA for dormancy associated MADS-box 5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280197.11e-167MADS-box protein JOINTLESS-like
SwissprotQ9FUY61e-62JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLG1UE181e-166G1UE18_PRUMU; Dormancy associated MADS-box 5
STRINGXP_008219274.11e-154(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Sasaki R, et al.
    Functional and expressional analyses of PmDAM genes associated with endodormancy in Japanese apricot.
    Plant Physiol., 2011. 157(1): p. 485-97
    [PMID:21795580]
  2. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]