PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10068_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 231aa    MW: 25725.6 Da    PI: 8.2798
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10068_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.96.6e-26441712128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dkevl 93 
                     ++G+rF+P+de l ++yL  k +g++  ++++ ik+vd+y+++P+dL   +++ ++ ++yfF++ +kky+    +    + g Wk+t +   +v+
  Neem_10068_f_1  44 AVGVRFNPKDEVLASHYLFGKESGSSgGPIFSLIKDVDVYQHDPSDLSrLAYDFGKGKMYFFTPLNKKYKV---P--GPSGGCWKKTREqPSSVK 133
                     68*****************99998887788899**************944555677799*********963...2..24589****998356777 PP

             NAM  94 skkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                      k+g+ v +k tLv+y   ++++++++kt+W+m+ey l
  Neem_10068_f_1 134 GKDGNPVATKSTLVYYkndQKQNSNAVKTQWLMKEYML 171
                     78999***********55445777888*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-2940193IPR003441NAC domain
PROSITE profilePS5100530.45343193IPR003441NAC domain
PfamPF023651.7E-1545170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAAPATMASS SSSKYANEGK AYNLSKISNS LIADDSIKWE QKVAVGVRFN PKDEVLASHY  60
LFGKESGSSG GPIFSLIKDV DVYQHDPSDL SRLAYDFGKG KMYFFTPLNK KYKVPGPSGG  120
CWKKTREQPS SVKGKDGNPV ATKSTLVYYK NDQKQNSNAV KTQWLMKEYM LLDNQLSKRN  180
ARHSWTLCVV YNSKRHGDCS QKMSDDEDNE FISSDSCEDS ASDMSQSDSD Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-174019412169Stress-induced transcription factor NAC1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1852528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-20NAC domain containing protein 32