PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10068_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 219aa MW: 25270.7 Da PI: 10.0726

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10068_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.4	5.7e-36	49	180	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l pG+ F+Ptdeelv +yL +k+ g + +++ik +++y++eP++L+ + ++++++w+fF++ +kky++g++ nr++ g+Wk+tg+ +++ Neem_10068_f_2 49 LEPGMVFDPTDEELVFDYLIEKAVGGSeRGGFRFIKYIELYQHEPSQLRsLAQDSGQEKWFFFTPLQKKYQRGNNINRQVPGGFWKKTGSPSAIK 143 579**************999777773556788**********9445566888********************************* PP NAM 94 skkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ g+++ +k++L++yk+ ++++++kt+W+m+eyrl Neem_10068_f_2 144 DQAGKDIATKTSLAYYKKdkTSNQSVKTEWLMKEYRL 180 ************7622566778*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-37	40	204	IPR003441	NAC domain
PROSITE profile	PS51005	39.239	49	204	IPR003441	NAC domain
Pfam	PF02365	1.5E-18	51	180	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MRTFQSKVFL ISIRNVKAEV DSGGSLDSAV STVQVMIHNL FTTSCQKMLE PGMVFDPTDE 60 ELVFDYLIEK AVGGSERGGF RFIKYIELYQ HEPSQLRSLA QDSGQEKWFF FTPLQKKYQR 120 GNNINRQVPG GFWKKTGSPS AIKDQAGKDI ATKTSLAYYK KDKTSNQSVK TEWLMKEYRL 180 KNQPPNNQND EESEMLTLCR IYRSKLRGRT NRRRSDVNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-23	46	203	14	164	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-23	46	203	14	164	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-23	46	203	14	164	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-23	46	203	14	164	NO APICAL MERISTEM PROTEIN
3swm_A	9e-23	46	203	17	167	NAC domain-containing protein 19
3swm_B	9e-23	46	203	17	167	NAC domain-containing protein 19
3swm_C	9e-23	46	203	17	167	NAC domain-containing protein 19
3swm_D	9e-23	46	203	17	167	NAC domain-containing protein 19
3swp_A	9e-23	46	203	17	167	NAC domain-containing protein 19
3swp_B	9e-23	46	203	17	167	NAC domain-containing protein 19
3swp_C	9e-23	46	203	17	167	NAC domain-containing protein 19
3swp_D	9e-23	46	203	17	167	NAC domain-containing protein 19
3ulx_A	1e-22	49	205	15	169	Stress-induced transcription factor NAC1
4dul_A	8e-23	46	203	14	164	NAC domain-containing protein 19
4dul_B	8e-23	46	203	14	164	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437371.1	6e-34	uncharacterized protein LOC18043989 isoform X1
TrEMBL	A0A067E7E1	7e-33	A0A067E7E1_CITSI; Uncharacterized protein
STRING	XP_006437371.1	2e-33	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18525	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	9e-27	NAC domain containing protein 35