PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10226_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HD-ZIP
Protein Properties Length: 225aa    MW: 25461.6 Da    PI: 8.1909
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10226_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.6e-183790456
                    -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++f++eq++ Le+ F + + ++   ++ +LAk+lgL+ rqV +WFqN+Ra++k
  Neem_10226_f_1 37 TRRFSDEQIRLLETIFVSeSTKLEPMKKLQLAKELGLQPRQVAIWFQNKRARWK 90
                    468**************88**********************************9 PP
2HD-ZIP_I/II117.57.5e-3836126291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     + rr+s+eq++lLE+ F +e+ kLep +K +la+eLglqprqva+WFqn+RAR+k+kq+E+dy++Lk++yd l+++ e+L+ke+++L +e+
  Neem_10226_f_1  36 NTRRFSDEQIRLLETIFVSEStKLEPMKKLQLAKELGLQPRQVAIWFQNKRARWKSKQIEQDYAKLKANYDCLASRFESLKKEKDTLLAEV 126
                     579**************99888****************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-172293IPR009057Homeodomain-like
PROSITE profilePS5007116.2123192IPR001356Homeobox domain
SMARTSM003892.4E-163496IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-173799IPR009057Homeodomain-like
PfamPF000463.3E-153790IPR001356Homeobox domain
CDDcd000868.81E-143893No hitNo description
PRINTSPR000317.9E-66372IPR000047Helix-turn-helix motif
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
PRINTSPR000317.9E-67288IPR000047Helix-turn-helix motif
PfamPF021836.7E-1392126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MESFREDSAA SSAEANSETF TFPVHLQKKK KIKSKNTRRF SDEQIRLLET IFVSESTKLE  60
PMKKLQLAKE LGLQPRQVAI WFQNKRARWK SKQIEQDYAK LKANYDCLAS RFESLKKEKD  120
TLLAEVLNEQ MGSYTGSLEK GNIKCELGAS KLSFMEELQE NNINSVGIGQ YGNEGHEFIN  180
VERINNDSVV SSEKWFGNGG GSFNSGGLLD PSTSSGSQWL NFWPV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021805522.14e-57homeobox-leucine zipper protein ATHB-12-like
SwissprotQ9M2762e-38ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLQ9XH732e-55Q9XH73_PRUAR; Homeobox leucine zipper protein
STRINGEMJ195682e-55(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17513810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.28e-40homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]