PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10276_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 509aa MW: 56122.3 Da PI: 6.2791

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10276_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.5	2.3e-103	65	404	1	290
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA++v++g+ e+a+ L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ + +++ee+ ++klf+e++P+lk+++ Neem_10276_f_4 65 LIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTMQRIAAYFTEALADRMLKAWPGLHKALNSTKIA--SVTEEILVQKLFFELCPFLKLAY 157 689***********************************************************999998..5****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +++NqaI+ea+ege++vHiiD+ +++QW++Llq+L++Rpegpp+lRiTg+++ +ke le+++ rL++ Ae+l++pf+fn+ ++++le+l+ Neem_10276_f_4 158 VITNQAIVEAMEGEKMVHIIDLYSFEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-IVSKLENLD 247 **************************************************....9**********************.7999* PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll.............................................................desvsleser 224 le+Lrvk+gEalaV++vlqlh+ll + s++ Neem_10276_f_4 248 LESLRVKTGEALAVSSVLQLHSLLptdddpqkrnspsasktpnsnhlqrvfqmnhrtlgewlekdsiqmfspspdsasastplslAASAK----M 338 *************************************************************************9977554444444....5 PP GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 ++L+++++l Pk++vv+eqe++hn+++++er++eal++y+a+fd+le++++r s er+kvE++l+ Neem_10276_f_4 339 GNFLNALWGLTPKLMVVTEQESNHNGATLMERVMEALNFYAAMFDCLESTISRGSVERQKVEKMLF 404 56************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.345	39	474	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-101	65	404	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MVSALHFRAS SLLSLLMAGM VQEEGSSSVT SSPLQFFSLM SLSPGFGSPY PWLRELKSEE 60 RGLCLIHLLV ACANHVAAGS VENANIGLEQ ISHLASPDGD TMQRIAAYFT EALADRMLKA 120 WPGLHKALNS TKIASVTEEI LVQKLFFELC PFLKLAYVIT NQAIVEAMEG EKMVHIIDLY 180 SFEPAQWINL LQTLSARPEG PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV 240 SKLENLDLES LRVKTGEALA VSSVLQLHSL LPTDDDPQKR NSPSASKTPN SNHLQRVFQM 300 NHRTLGEWLE KDSIQMFSPS PDSASASTPL SLAASAKMGN FLNALWGLTP KLMVVTEQES 360 NHNGATLMER VMEALNFYAA MFDCLESTIS RGSVERQKVE KMLFDLNNPL PPTIGISLIS 420 LKTGFLPRML MLLPLYFPSM KAKFITTSKE HLVGLLCHTV LELFQQAWKC SGPSVKGPSI 480 ITVVPKLYAV PFGGPVILIE VGSLPLTMS

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MVSALHFRAS SLLSLLMAGM VQEEGSSSVT SSPLQFFSLM SLSPGFGSPY PWLRELKSEE  60
RGLCLIHLLV ACANHVAAGS VENANIGLEQ ISHLASPDGD TMQRIAAYFT EALADRMLKA  120
WPGLHKALNS TKIASVTEEI LVQKLFFELC PFLKLAYVIT NQAIVEAMEG EKMVHIIDLY  180
SFEPAQWINL LQTLSARPEG PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV  240
SKLENLDLES LRVKTGEALA VSSVLQLHSL LPTDDDPQKR NSPSASKTPN SNHLQRVFQM  300
NHRTLGEWLE KDSIQMFSPS PDSASASTPL SLAASAKMGN FLNALWGLTP KLMVVTEQES  360
NHNGATLMER VMEALNFYAA MFDCLESTIS RGSVERQKVE KMLFDLNNPL PPTIGISLIS  420
LKTGFLPRML MLLPLYFPSM KAKFITTSKE HLVGLLCHTV LELFQQAWKC SGPSVKGPSI  480
ITVVPKLYAV PFGGPVILIE VGSLPLTMS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	8e-41	48	261	1	216	Protein SCARECROW
5b3h_D	8e-41	48	261	1	216	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002267910.1	0.0	PREDICTED: scarecrow-like protein 3 isoform X1
Refseq	XP_010645688.1	0.0	PREDICTED: scarecrow-like protein 3 isoform X1
Swissprot	Q9LPR8	1e-166	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A438GU36	0.0	A0A438GU36_VITVI; Scarecrow-like protein 3
TrEMBL	F6GX84	0.0	F6GX84_VITVI; Uncharacterized protein
STRING	VIT_13s0019g01220.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4098	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-164	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]