PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10285_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 186aa MW: 21131.7 Da PI: 5.6662

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10285_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Neem_10285_f_1 32 YECVFCKRGFTTAQALGGHMNIH 54 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.47E-6	30	58	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.7E-4	30	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.99	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MESNTHEDSK TSSEETDRSE QANDDMGTGR SYECVFCKRG FTTAQALGGH MNIHRKDRAK 60 NRPNSVPSIS EKADENYATF RSHTPFQSYP TAHHHFAMAS EVHVNYQTYF PASTWDERSP 120 QTYHSNDIHS PYGNNPQHLN LFGDDVWRGN LSLAVGPSHV PEDEERREGA SKQDELDLEL 180 RLGHDP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050365.1	1e-78	PREDICTED: transcriptional regulator TAC1
TrEMBL	A0A061DQ22	3e-77	A0A061DQ22_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRING	EOX94522	4e-78	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15373	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	7e-17	C2H2 family protein