PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_102_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ZF-HD

Protein Properties

Length: 243aa MW: 26769.7 Da PI: 7.2026

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_102_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.3	2.8e-31	52	105	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrY+eClkN+A+++G havDGCgEfm++ geegt +alkCaAC+CHRnFHR+e++ Neem_102_f_4 52 VRYRECLKNQAVNIGRHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKETD 105 89***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.7E-29	52	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.0E-27	53	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-22	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.064	54	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.1E-21	167	241	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-32	169	242	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.2E-27	180	236	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEFEEHEEQE EEIGAPLPTD YDSLSNSVRP QMAPTTAAGE GASTARKTGT PVRYRECLKN 60 QAVNIGRHAV DGCGEFMAAG EEGTLDALKC AACNCHRNFH RKETDGGDSG PLIYHQQHPH 120 HHQQFQPYYR APPPPAGYLH LTPPRPLALP SSSGGGGAYS REDEDVSNPS SSGGGSGGTR 180 KRFRTKFTPE QKEKMLGFAE QLGWRIQKHD EASVEQFCAE TGVKRHVLKV WMHNNKHTLG 240 KKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-29	179	238	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605260.1	1e-111	zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	7e-80	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2C9WGM6	1e-108	A0A2C9WGM6_MANES; Uncharacterized protein
STRING	XP_010266504.1	1e-103	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	8e-69	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]