PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10315_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 364aa MW: 40991.7 Da PI: 10.4025

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10315_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	32.5	1.8e-10	281	300	3	22
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 D+y+WrKYGqK++kgs++pr Neem_10315_f_3 281 DEYSWRKYGQKPIKGSPHPR 300 9******************9 PP
2	WRKY	51.7	1.7e-16	314	354	20	59
S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 f +YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ Neem_10315_f_3 314 FNWGYYKCSSVrGCPARKHVERCPEDPSMLIVTYEGEHNHS 354 6678***988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.7E-18	232	277	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.2E-29	267	355	IPR003657	WRKY domain
PROSITE profile	PS50811	24.593	274	356	IPR003657	WRKY domain
SuperFamily	SSF118290	1.26E-20	277	354	IPR003657	WRKY domain
SMART	SM00774	6.8E-35	279	355	IPR003657	WRKY domain
Pfam	PF03106	1.3E-19	281	353	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MEEVEAANKA AVESCHRVLA LFSQHKDQVQ YRNLAVETGE AVFKFRKVVS LLSNRLGHGR 60 ARKLKKLKPP SSLPQNIFLD SPSFRPVLSP KPLQIIPANF HENPVQLTKN LFDDNQSQAK 120 IPSFKSPLQI APPGLPQNFQ FMHHQQQMQR LQFQQQQKYQ AEIMMYSGRS NSGINLKFDG 180 SSSCTPSTMS STKSLVSSLS LDCSVANLDG SSNSFHLIGV PQQSSQISQH SRKRCFGRGE 240 EGSVKCSTSG KCHCSKRRKH RIKRTIKVPA ISNKVADIPP DEYSWRKYGQ KPIKGSPHPR 300 LVWAGLNYLY KASFNWGYYK CSSVRGCPAR KHVERCPEDP SMLIVTYEGE HNHSRLQSSQ 360 SAHT

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MEEVEAANKA AVESCHRVLA LFSQHKDQVQ YRNLAVETGE AVFKFRKVVS LLSNRLGHGR  60
ARKLKKLKPP SSLPQNIFLD SPSFRPVLSP KPLQIIPANF HENPVQLTKN LFDDNQSQAK  120
IPSFKSPLQI APPGLPQNFQ FMHHQQQMQR LQFQQQQKYQ AEIMMYSGRS NSGINLKFDG  180
SSSCTPSTMS STKSLVSSLS LDCSVANLDG SSNSFHLIGV PQQSSQISQH SRKRCFGRGE  240
EGSVKCSTSG KCHCSKRRKH RIKRTIKVPA ISNKVADIPP DEYSWRKYGQ KPIKGSPHPR  300
LVWAGLNYLY KASFNWGYYK CSSVRGCPAR KHVERCPEDP SMLIVTYEGE HNHSRLQSSQ  360
SAHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-16	277	354	12	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021894273.1	1e-169	probable WRKY transcription factor 74
Swissprot	Q9SR07	1e-115	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A061F110	1e-152	A0A061F110_THECC; WRKY DNA-binding protein 21 isoform 1
STRING	evm.model.supercontig_1244.3	1e-168	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	5e-81	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]