PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10336_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 464aa MW: 51721 Da PI: 8.9412

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10336_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.1e-08	337	384	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d++ q+G g W+ I r + +Rt+ +++++w+++l Neem_10336_f_2 337 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssAHRTPIDLRDKWRNLL 384 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.675	329	388	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-11	330	391	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-8	333	386	IPR001005	SANT/Myb domain
CDD	cd11660	8.05E-18	335	385	No hit	No description
SuperFamily	SSF46689	1.35E-15	335	394	IPR009057	Homeodomain-like
Pfam	PF13921	6.0E-7	337	398	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MSNPILETSL YLENRVVANK LCSLLCIRGG LDSYNAQGED DLKLEVLDGL LDDVDEVDDF 60 YAATDLSTAY IEFAEKVTEL DCVPVEGSHL GNSSSESHSP GFSGSNVAVG ISDSSTAPES 120 ECKDDSPEKM VTCELHSTEC QIPVDKKSPS TDDVNNFDEL DNDDNVLLSS ILSKCKKRVK 180 GSVLGTKVKR LRKPTQRYIE ESSDLKSGYL LRGQKISPAT LKDKHQKVKS QDESFSGSRQ 240 APAESWLRGG RLKKSSPMLH SVMSLLLLSA CWQGSRRFPL ILLHHSVMSL LLFISMLAGF 300 LGFDSNDDIS SSDSDDDHVR KRKSKVDVDR RKHQRMWTLS EVMKLIDGIS QFGVGKWTDI 360 KRLLFSSSAH RTPIDLRDKW RNLLRASCAQ KKTKGEVEQK HAMRTLPKPV LCRIRELATI 420 HPYPRVPNLK ISGNGNVVSL KQSAKAKGVP FISHGRNIRR KKHT

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MSNPILETSL YLENRVVANK LCSLLCIRGG LDSYNAQGED DLKLEVLDGL LDDVDEVDDF  60
YAATDLSTAY IEFAEKVTEL DCVPVEGSHL GNSSSESHSP GFSGSNVAVG ISDSSTAPES  120
ECKDDSPEKM VTCELHSTEC QIPVDKKSPS TDDVNNFDEL DNDDNVLLSS ILSKCKKRVK  180
GSVLGTKVKR LRKPTQRYIE ESSDLKSGYL LRGQKISPAT LKDKHQKVKS QDESFSGSRQ  240
APAESWLRGG RLKKSSPMLH SVMSLLLLSA CWQGSRRFPL ILLHHSVMSL LLFISMLAGF  300
LGFDSNDDIS SSDSDDDHVR KRKSKVDVDR RKHQRMWTLS EVMKLIDGIS QFGVGKWTDI  360
KRLLFSSSAH RTPIDLRDKW RNLLRASCAQ KKTKGEVEQK HAMRTLPKPV LCRIRELATI  420
HPYPRVPNLK ISGNGNVVSL KQSAKAKGVP FISHGRNIRR KKHT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428745.1	0.0	uncharacterized protein LOC18039657 isoform X2
Refseq	XP_006428746.1	0.0	uncharacterized protein LOC18039657 isoform X2
Refseq	XP_006481484.1	0.0	uncharacterized protein LOC102617973 isoform X2
Refseq	XP_006481485.1	0.0	uncharacterized protein LOC102617973 isoform X2
Refseq	XP_006481487.1	0.0	uncharacterized protein LOC102617973 isoform X4
TrEMBL	A0A2H5Q8D6	0.0	A0A2H5Q8D6_CITUN; Uncharacterized protein
STRING	XP_006481484.1	0.0	(Citrus sinensis)
STRING	XP_006428745.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9200	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	5e-24	TRF-like 6