PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10371_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 400aa    MW: 44734.2 Da    PI: 9.1128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10371_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.2e-15186231555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRdriN+++  L++l+P+a      K +Ka++Le+++eY+k+L+
  Neem_10371_f_1 186 HNQSERKRRDRINQKMKALQRLVPNA-----SKTDKASMLEEVIEYLKQLK 231
                     9************************9.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.65181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-18184254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16186245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-13186230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.67E-16186235No hitNo description
SMARTSM003534.2E-16187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MIRGSRWRSS SSNEVAEPTW ENGQQQGLGG LIIHQPTTTS TETQNNRPFV DSVNLIQTSV  60
QPKLSSFSMV PPSALLNLQK QRTPADRYTC TEEEEMGNRS ASASGSATFF RDHNDTTMMT  120
WPNSHDSLAS FKTKSSTDDD STACRARPHA HPHAVSENQD DEDHRENKVE EGRSHSSRRS  180
RAAAIHNQSE RKRRDRINQK MKALQRLVPN ASKTDKASML EEVIEYLKQL KAQVQLMSNL  240
RNMVQSQQLM SNLRNMAQSQ MIMPIGLQQQ QQHHLQLMSL LAAARMGLGM LDMNTIATAR  300
SASHQLLVPP TASLSDATTT FVPSPFVVPP ETASDTVNNI ASVPMITHPY FAFLSQMQSM  360
NMELHNKMSA LYRQQVKQIT QQQATSSSPS THLHSARDLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571977.13e-82transcription factor PIF7 isoform X1
RefseqXP_015571978.11e-82transcription factor PIF7 isoform X2
TrEMBLA0A2P5FW114e-76A0A2P5FW11_TREOI; Basic helix-loop-helix transcription factor
STRINGEOY219716e-76(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-25bHLH family protein