PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10372_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 227aa    MW: 25443.3 Da    PI: 6.6287
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10372_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161464146
                     TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46
                     +g WT+eEd +l  +v+++G         W++Ia+ ++ gRt++++k++w++
   Neem_10372_f_1 14 KGTWTPEEDRKLMAYVTRYGCWnwrqlpKWSAIAAQLP-GRTDNEIKNHWHT 64
                     799*****************55****************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-16377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-23576IPR009057Homeodomain-like
PROSITE profilePS5129421.489970IPR017930Myb domain
SMARTSM007175.3E-111368IPR001005SANT/Myb domain
PfamPF002495.2E-141464IPR001005SANT/Myb domain
CDDcd001671.27E-111666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARTPCCDKT GLKKGTWTPE EDRKLMAYVT RYGCWNWRQL PKWSAIAAQL PGRTDNEIKN  60
HWHTSLKKRL KQTSVTNEAK RKPKHPIYDD IDRQGEPIAS GNSQEGESKV KVDSREGESK  120
LNNHHLNHMI TPSILESSPS SSQPSSSDQL SSITTDTSVV SSTELMLDNK DVLFQPYAEA  180
SGSFWTEPFL ADNSFNLYIS NDLLAPLSST GYASPHSSFL DGEILWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571LKKRLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296898.11e-68transcription factor MYB4-like
TrEMBLA0A061E3S12e-66A0A061E3S1_THECC; Myb domain protein 15, putative
STRINGEOX992624e-67(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.13e-24myb domain protein 41