PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10397_f_8
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRF
Protein Properties Length: 513aa    MW: 55561.8 Da    PI: 8.3712
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10397_f_8genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24200243144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+ep+rCrRtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  Neem_10397_f_8 200 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 243
                     79***************************************987 PP
2QLQ45.42.5e-16137172237
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     +FTaaQl +L +Q l+yKyL++++P+P+eLl++i+k
  Neem_10397_f_8 137 PFTAAQLRELDRQTLIYKYLMSSVPLPHELLFPITK 172
                     9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-8136172IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.9E-10137170IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.303137172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.479200244IPR014977WRC domain
PfamPF088791.1E-19201243IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MGTRNESLGS KKKQCNVVGL DLRPRMQESP SSSSKRMMFL PHNYYNNHEA VLLSSSSCRG  60
FDSSGSVGGS MFSNTSNQIA CMSDIYDVVG AASGSGTNAS VLMSKSLNPP NSDSFFPFNF  120
SGEVAASGVN ANVRVPPFTA AQLRELDRQT LIYKYLMSSV PLPHELLFPI TKNPSSVSPS  180
QPSLVQGSMD LGLLSSNNSD PEPWRCRRTD GKKWRCSRDV APDQKYCERH SHKSRPRSRK  240
PVELPSHLNN NSSSSNNQNV TQSLNPSSNC NTINKSFVSS HLLNQNLASS VPSTGSQQQQ  300
RNLDCFMKGE TMPVASYSNQ EWLQMMQSKL ESNRDSSKYG EQHRGDLINS NSYTNLGGND  360
LAFQAQWLGD PYSLRLSPKM VSHQSQIQGT RHFIDAWSIA GGNMANKDGI GSSCFVSPNE  420
KLPISSLTLT MCGGSETFER NENAMMNTLR MGCSEGENVG TLRPHWMNHV SGMGSAPGGP  480
LAEALCLGIS GSGKSDSNAA SPHGCSTSTT TSS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085414e-44DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476277.10.0growth-regulating factor 7-like isoform X1
TrEMBLA0A067GMX21e-176A0A067GMX2_CITSI; Uncharacterized protein
STRINGXP_006476277.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-27growth-regulating factor 8