PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10469_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 257aa MW: 27775.1 Da PI: 9.2993

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10469_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	13	73	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Neem_10469_f_1 13 PEAPLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 73 67889*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-32	1	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.6E-33	16	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.665	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MADRARLAKV PQPEAPLKCP RCDSTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRNV 60 PVGGGCRRNK KNKSSSSKSV VNTEKQISSN STSALPSEII GHLPQQTPQL PLMTSLHTLS 120 QYNLGNLGLS FGGIQAQIGA SSVGSSHTDV GFQIASNSSM SSAIFSAGGV QQFPFFEPPP 180 TGLYPFQSEG IEASSSIVGS MTSNSRVSEQ APVKMEDPQG LNSSRQFMGI AENNQYWSAN 240 NWTDLPGLNC SSANHLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021660830.1	1e-130	dof zinc finger protein DOF2.2-like
TrEMBL	A0A2C9V0Z2	1e-122	A0A2C9V0Z2_MANES; Uncharacterized protein
STRING	cassava4.1_029949m	1e-129	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	6e-50	OBF-binding protein 3