PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1055_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 750aa    MW: 83094.9 Da    PI: 5.9933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1055_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000715826191355
                    HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  Neem_1055_f_6 582 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 619
                    77899************55......7777778999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-357168IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00144563619No hitNo description
PROSITE profilePS5088811.388569618IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-5582631IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-4582625IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MGTTADLHAI LKSLCFNTAW KYAVFWKLKH RARMVLTWED GYYDNCERHD SLEDKFSSEV  60
LETLHGGHYS HDPLGLEVAK MSYHVYSLGE GIVGQVAVTG KYQWIFSDQH VTNSCSSFEF  120
CDGWQSQFSA GIRTIAVVAA VPHGVVQLGS LNRVVEDIKL VTHIRDLFLA LNDFAVGDFS  180
SAIQCSMKNT LPLPDLPTKS LASEIIPNRW CNLGEVENKE GPDVQLPMLP FVENNNNGSY  240
VYPLSGIQPK TGVEVVNKHE GTQLSTEGSD GKAKLLKSES NAINLQHQNQ MGIHIISDGM  300
SKGETSGWKN LGVISEQNAA PFSINSVIDN INLCSVALQA EKFVVDHTYF PSNPLDSVLS  360
AKVKLECMDS YQNGIIPEIS NMKFQKDLEK LQNQTELDHL DPLDRSLKFS AGSELHEALG  420
PAFRKKSVYN DREPENTVDG ETVLMPEVMS SSHLTIDSAS ENLLEAVVAN VCHSGSDVKS  480
ERSFCKSVQS LLTTEKMPEP SSQSKNTINS VGYSISQSSL VEEDTKQCLN SSEVCGTMSS  540
KGFSSNCPTT CSEQLDRSSE PTKNSKKRTR PGENSRPRPR DRQLIQDRIK ELRELVPNGS  600
KCSIDSLLER TIKHMLFLQS ITKHADKLSK CAESKMHQKG TSIQGSNYEQ GSSWAVEVGS  660
HLKVCSIIVE NLNKNGQMLV EMLCEECSHF LEIAEAIRSL GLTILKGVTE AHGDKTWICF  720
VVEGQDNRIM HRMDVLWSLV QVLQSKSTCS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4403514e-34AM440351.2 Vitis vinifera contig VV78X153936.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443866.10.0transcription factor bHLH155 isoform X1
RefseqXP_015386328.10.0transcription factor bHLH155 isoform X1
TrEMBLA0A067FM700.0A0A067FM70_CITSI; Uncharacterized protein
TrEMBLA0A2H5QGU10.0A0A2H5QGU1_CITUN; Uncharacterized protein
STRINGXP_006443866.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20832030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.10.0conserved peptide upstream open reading frame 7