PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10584_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 675aa    MW: 76446.9 Da    PI: 6.6739
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10584_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.18.3e-1183036713374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+a +s+d++ a++lL+++++++s  gd +qRla+yf +AL+arl++s++ +   ++ +++     ++ l+a+++++  +P+ ++s+l+
  Neem_10584_f_4 303 TLLTQCAQAGASNDHRTANELLKQIRQHSSAFGDGTQRLAHYFGNALEARLLGSQTPTHIHISHRAS----AADILKAYQVYVSSCPFKRMSYLM 393
                     69***************************************************66555544444444....69********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aNq+I + +e+++r+HiiDf+i +G+QWp+L+q L++Rp gpp+lRiTg++ p++g   +e++eetg+rL++++e++gvpfe+++ +a+++e++ 
  Neem_10584_f_4 394 ANQTIAKLAEKATRLHIIDFGICYGFQWPCLIQFLSKRPTGPPMLRITGIDLPQAGfrPAERVEETGRRLKNYCERFGVPFEYKA-IAQKWETIP 487
                     *******************************************************9*****************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     le+L++++gE+++Vn+++++++l+d++v  +s rd+vL+l+k++ P+++++   +  hn++ Fl+rf eal ++salfd++ea++p+e+e+r+  
  Neem_10584_f_4 488 LEDLKINRGEVTVVNCMYRMKNLPDDTVVDKSIRDAVLNLIKRIDPDMFIHGIVNGTHNAPFFLTRFREALFHFSALFDMFEATIPKEDEQRMLF 582
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Ere++g+e+ n++aceg er+er et+++W++r ++aGF++++l +++ k++++ ++ ++ + + v+e+ +++++gWk+r + ++S+W+
  Neem_10584_f_4 583 EREIFGNEVLNAIACEGIERVERPETYKQWQSRNQRAGFRQLQLHQEILKKVRTNIKSCYHRDFVVDEDGHWMLQGWKGRVIHALSVWK 671
                     ************************************************************999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.979275651IPR005202Transcription factor GRAS
PfamPF035142.9E-115303671IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MDTLLGGFPE SMNRFKFDHG SISSCSNHNL ANGFKLNHDF IDDHPPFLQT NQLPPGDSFP  60
SSGTSSDGDS PDSSEISNVV LKYISEILME EDMEGKPCML QDCLALQAAE KSFYDVLGQE  120
YPPSPNHLPC LRQNIERPDD NFTRSGSSGD SSSTSVNLFD SPESNPLMPN LYKSVIFSPE  180
SSPPHHGEEG VVSSVENGRH NSSYGSRGRK IDQREDSDYL DAGRRNKHSA VSFAESHEQS  240
EMFDEVLLCK SGQDESELCS LHQESQTGSN KKVQQNEQSK GSNGGTTKRK KRGNKREVVD  300
LWTLLTQCAQ AGASNDHRTA NELLKQIRQH SSAFGDGTQR LAHYFGNALE ARLLGSQTPT  360
HIHISHRASA ADILKAYQVY VSSCPFKRMS YLMANQTIAK LAEKATRLHI IDFGICYGFQ  420
WPCLIQFLSK RPTGPPMLRI TGIDLPQAGF RPAERVEETG RRLKNYCERF GVPFEYKAIA  480
QKWETIPLED LKINRGEVTV VNCMYRMKNL PDDTVVDKSI RDAVLNLIKR IDPDMFIHGI  540
VNGTHNAPFF LTRFREALFH FSALFDMFEA TIPKEDEQRM LFEREIFGNE VLNAIACEGI  600
ERVERPETYK QWQSRNQRAG FRQLQLHQEI LKKVRTNIKS CYHRDFVVDE DGHWMLQGWK  660
GRVIHALSVW KAVQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5030767024377Protein SCARECROW
5b3h_D5e-5030767024377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424857.10.0scarecrow-like protein 30
RefseqXP_006488349.10.0scarecrow-like protein 30
TrEMBLV4SC430.0V4SC43_9ROSI; Uncharacterized protein
STRINGXP_006488349.10.0(Citrus sinensis)
STRINGXP_006424857.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-179GRAS family protein