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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_10584_f_4 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | GRAS | ||||||||
| Protein Properties | Length: 675aa MW: 76446.9 Da PI: 6.6739 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 385.1 | 8.3e-118 | 303 | 671 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
+lL++cA+a +s+d++ a++lL+++++++s gd +qRla+yf +AL+arl++s++ + ++ +++ ++ l+a+++++ +P+ ++s+l+
Neem_10584_f_4 303 TLLTQCAQAGASNDHRTANELLKQIRQHSSAFGDGTQRLAHYFGNALEARLLGSQTPTHIHISHRAS----AADILKAYQVYVSSCPFKRMSYLM 393
69***************************************************66555544444444....69********************** PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
aNq+I + +e+++r+HiiDf+i +G+QWp+L+q L++Rp gpp+lRiTg++ p++g +e++eetg+rL++++e++gvpfe+++ +a+++e++
Neem_10584_f_4 394 ANQTIAKLAEKATRLHIIDFGICYGFQWPCLIQFLSKRPTGPPMLRITGIDLPQAGfrPAERVEETGRRLKNYCERFGVPFEYKA-IAQKWETIP 487
*******************************************************9*****************************.7******** PP
GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
le+L++++gE+++Vn+++++++l+d++v +s rd+vL+l+k++ P+++++ + hn++ Fl+rf eal ++salfd++ea++p+e+e+r+
Neem_10584_f_4 488 LEDLKINRGEVTVVNCMYRMKNLPDDTVVDKSIRDAVLNLIKRIDPDMFIHGIVNGTHNAPFFLTRFREALFHFSALFDMFEATIPKEDEQRMLF 582
*********************************************************************************************** PP
GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
Ere++g+e+ n++aceg er+er et+++W++r ++aGF++++l +++ k++++ ++ ++ + + v+e+ +++++gWk+r + ++S+W+
Neem_10584_f_4 583 EREIFGNEVLNAIACEGIERVERPETYKQWQSRNQRAGFRQLQLHQEILKKVRTNIKSCYHRDFVVDEDGHWMLQGWKGRVIHALSVWK 671
************************************************************999*************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 65.979 | 275 | 651 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 2.9E-115 | 303 | 671 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 675 aa Download sequence Send to blast |
MDTLLGGFPE SMNRFKFDHG SISSCSNHNL ANGFKLNHDF IDDHPPFLQT NQLPPGDSFP 60 SSGTSSDGDS PDSSEISNVV LKYISEILME EDMEGKPCML QDCLALQAAE KSFYDVLGQE 120 YPPSPNHLPC LRQNIERPDD NFTRSGSSGD SSSTSVNLFD SPESNPLMPN LYKSVIFSPE 180 SSPPHHGEEG VVSSVENGRH NSSYGSRGRK IDQREDSDYL DAGRRNKHSA VSFAESHEQS 240 EMFDEVLLCK SGQDESELCS LHQESQTGSN KKVQQNEQSK GSNGGTTKRK KRGNKREVVD 300 LWTLLTQCAQ AGASNDHRTA NELLKQIRQH SSAFGDGTQR LAHYFGNALE ARLLGSQTPT 360 HIHISHRASA ADILKAYQVY VSSCPFKRMS YLMANQTIAK LAEKATRLHI IDFGICYGFQ 420 WPCLIQFLSK RPTGPPMLRI TGIDLPQAGF RPAERVEETG RRLKNYCERF GVPFEYKAIA 480 QKWETIPLED LKINRGEVTV VNCMYRMKNL PDDTVVDKSI RDAVLNLIKR IDPDMFIHGI 540 VNGTHNAPFF LTRFREALFH FSALFDMFEA TIPKEDEQRM LFEREIFGNE VLNAIACEGI 600 ERVERPETYK QWQSRNQRAG FRQLQLHQEI LKKVRTNIKS CYHRDFVVDE DGHWMLQGWK 660 GRVIHALSVW KAVQD |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3h_A | 5e-50 | 307 | 670 | 24 | 377 | Protein SCARECROW |
| 5b3h_D | 5e-50 | 307 | 670 | 24 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006424857.1 | 0.0 | scarecrow-like protein 30 | ||||
| Refseq | XP_006488349.1 | 0.0 | scarecrow-like protein 30 | ||||
| TrEMBL | V4SC43 | 0.0 | V4SC43_9ROSI; Uncharacterized protein | ||||
| STRING | XP_006488349.1 | 0.0 | (Citrus sinensis) | ||||
| STRING | XP_006424857.1 | 0.0 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM3646 | 25 | 61 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G37650.1 | 1e-179 | GRAS family protein | ||||




